Strain Fitness in Dechlorosoma suillum PS around Dsui_0864

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0862 and Dsui_0863 are separated by 154 nucleotidesDsui_0863 and Dsui_0864 are separated by 40 nucleotidesDsui_0864 and Dsui_0865 are separated by 16 nucleotides Dsui_0862: Dsui_0862 - hypothetical protein, at 876,989 to 877,414 _0862 Dsui_0863: Dsui_0863 - phosphate regulon transcriptional regulatory protein PhoB, at 877,569 to 878,261 _0863 Dsui_0864: Dsui_0864 - phosphate regulon sensor kinase PhoR, at 878,302 to 879,603 _0864 Dsui_0865: Dsui_0865 - hypothetical protein, at 879,620 to 881,233 _0865 Position (kb) 878 879 880Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 877.412 kb on - strandat 877.424 kb on - strandat 877.442 kb on + strandat 877.463 kb on - strandat 877.463 kb on - strandat 877.463 kb on - strandat 877.463 kb on - strandat 877.466 kb on + strandat 877.481 kb on - strandat 877.528 kb on + strandat 877.532 kb on - strandat 877.548 kb on + strandat 877.548 kb on + strandat 877.548 kb on + strandat 877.548 kb on + strandat 877.556 kb on - strandat 877.558 kb on + strandat 877.572 kb on - strandat 877.575 kb on + strandat 877.591 kb on + strandat 877.602 kb on + strandat 877.610 kb on - strandat 877.645 kb on + strand, within Dsui_0863at 877.649 kb on - strand, within Dsui_0863at 877.716 kb on + strand, within Dsui_0863at 877.787 kb on + strand, within Dsui_0863at 877.812 kb on - strandat 877.850 kb on + strand, within Dsui_0863at 877.850 kb on + strand, within Dsui_0863at 877.913 kb on + strand, within Dsui_0863at 877.915 kb on - strand, within Dsui_0863at 877.918 kb on + strand, within Dsui_0863at 877.931 kb on - strandat 877.950 kb on + strand, within Dsui_0863at 878.038 kb on - strand, within Dsui_0863at 878.045 kb on + strand, within Dsui_0863at 878.114 kb on + strand, within Dsui_0863at 878.114 kb on + strand, within Dsui_0863at 878.122 kb on - strand, within Dsui_0863at 878.122 kb on - strand, within Dsui_0863at 878.157 kb on + strand, within Dsui_0863at 878.157 kb on - strandat 878.189 kb on - strand, within Dsui_0863at 878.210 kb on + strandat 878.228 kb on - strandat 878.312 kb on - strandat 878.346 kb on + strandat 878.358 kb on + strandat 878.424 kb on + strandat 878.432 kb on - strandat 878.468 kb on - strandat 878.536 kb on + strand, within Dsui_0864at 878.633 kb on + strand, within Dsui_0864at 878.699 kb on + strand, within Dsui_0864at 878.777 kb on - strand, within Dsui_0864at 878.817 kb on + strand, within Dsui_0864at 878.824 kb on + strand, within Dsui_0864at 878.824 kb on + strand, within Dsui_0864at 878.872 kb on - strand, within Dsui_0864at 878.872 kb on - strand, within Dsui_0864at 878.891 kb on + strand, within Dsui_0864at 878.906 kb on - strand, within Dsui_0864at 878.962 kb on + strand, within Dsui_0864at 879.041 kb on + strand, within Dsui_0864at 879.042 kb on - strand, within Dsui_0864at 879.049 kb on - strand, within Dsui_0864at 879.061 kb on + strand, within Dsui_0864at 879.071 kb on - strand, within Dsui_0864at 879.071 kb on - strand, within Dsui_0864at 879.086 kb on + strand, within Dsui_0864at 879.178 kb on - strand, within Dsui_0864at 879.195 kb on - strandat 879.200 kb on + strand, within Dsui_0864at 879.260 kb on + strand, within Dsui_0864at 879.353 kb on + strand, within Dsui_0864at 879.410 kb on + strand, within Dsui_0864at 879.419 kb on + strand, within Dsui_0864at 879.504 kb on + strandat 879.554 kb on - strandat 879.569 kb on - strandat 879.584 kb on - strandat 879.588 kb on + strandat 879.631 kb on + strandat 879.631 kb on + strandat 879.663 kb on + strandat 879.671 kb on - strandat 879.746 kb on + strandat 879.759 kb on - strandat 879.800 kb on + strand, within Dsui_0865at 879.858 kb on + strand, within Dsui_0865at 879.888 kb on - strand, within Dsui_0865at 880.094 kb on - strand, within Dsui_0865at 880.178 kb on - strandat 880.231 kb on - strand, within Dsui_0865at 880.286 kb on + strandat 880.333 kb on + strandat 880.402 kb on - strand, within Dsui_0865at 880.581 kb on + strand, within Dsui_0865

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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877,412 - +0.2
877,424 - -0.1
877,442 + -0.4
877,463 - -1.0
877,463 - -0.4
877,463 - -0.4
877,463 - -0.4
877,466 + -1.7
877,481 - -1.0
877,528 + +0.4
877,532 - -0.4
877,548 + -1.7
877,548 + -0.4
877,548 + -0.8
877,548 + +3.2
877,556 - +0.6
877,558 + -1.0
877,572 - -2.4
877,575 + +0.4
877,591 + -0.4
877,602 + -0.4
877,610 - -0.4
877,645 + Dsui_0863 0.11 -0.4
877,649 - Dsui_0863 0.12 -0.4
877,716 + Dsui_0863 0.21 -0.4
877,787 + Dsui_0863 0.31 -2.2
877,812 - +0.6
877,850 + Dsui_0863 0.41 +0.8
877,850 + Dsui_0863 0.41 -0.6
877,913 + Dsui_0863 0.50 -0.4
877,915 - Dsui_0863 0.50 -1.0
877,918 + Dsui_0863 0.50 -1.8
877,931 - -0.4
877,950 + Dsui_0863 0.55 +0.3
878,038 - Dsui_0863 0.68 -0.0
878,045 + Dsui_0863 0.69 -1.4
878,114 + Dsui_0863 0.79 -0.3
878,114 + Dsui_0863 0.79 -0.4
878,122 - Dsui_0863 0.80 -0.4
878,122 - Dsui_0863 0.80 +0.6
878,157 + Dsui_0863 0.85 -0.8
878,157 - -0.4
878,189 - Dsui_0863 0.89 -1.4
878,210 + -0.3
878,228 - -0.4
878,312 - +0.6
878,346 + -0.0
878,358 + -0.7
878,424 + -0.0
878,432 - +0.6
878,468 - -1.0
878,536 + Dsui_0864 0.18 -0.3
878,633 + Dsui_0864 0.25 -0.9
878,699 + Dsui_0864 0.30 -1.1
878,777 - Dsui_0864 0.36 -0.2
878,817 + Dsui_0864 0.40 -0.4
878,824 + Dsui_0864 0.40 -1.3
878,824 + Dsui_0864 0.40 -0.6
878,872 - Dsui_0864 0.44 -1.0
878,872 - Dsui_0864 0.44 -2.4
878,891 + Dsui_0864 0.45 -0.3
878,906 - Dsui_0864 0.46 +0.6
878,962 + Dsui_0864 0.51 -0.4
879,041 + Dsui_0864 0.57 -1.3
879,042 - Dsui_0864 0.57 -0.4
879,049 - Dsui_0864 0.57 -2.2
879,061 + Dsui_0864 0.58 +0.0
879,071 - Dsui_0864 0.59 -3.3
879,071 - Dsui_0864 0.59 -1.0
879,086 + Dsui_0864 0.60 -1.3
879,178 - Dsui_0864 0.67 -0.4
879,195 - +0.6
879,200 + Dsui_0864 0.69 +0.8
879,260 + Dsui_0864 0.74 -0.4
879,353 + Dsui_0864 0.81 -1.1
879,410 + Dsui_0864 0.85 -1.4
879,419 + Dsui_0864 0.86 -0.6
879,504 + -0.6
879,554 - -1.0
879,569 - -1.7
879,584 - -0.4
879,588 + -1.7
879,631 + -1.0
879,631 + -0.4
879,663 + +0.6
879,671 - +0.6
879,746 + -0.4
879,759 - -0.1
879,800 + Dsui_0865 0.11 +0.6
879,858 + Dsui_0865 0.15 +0.6
879,888 - Dsui_0865 0.17 -1.0
880,094 - Dsui_0865 0.29 -1.4
880,178 - +0.6
880,231 - Dsui_0865 0.38 -1.0
880,286 + -1.0
880,333 + +0.6
880,402 - Dsui_0865 0.48 +0.6
880,581 + Dsui_0865 0.60 -2.0

Or see this region's nucleotide sequence