Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03616

Experiment: PYE_noCalcium 25C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep3 12 days
3,769,858	+		CCNA_03615	0.55	-5.5
3,769,866	+		CCNA_03615	0.56	-4.3
3,769,866	+		CCNA_03615	0.56	-4.2
3,769,868	+		CCNA_03615	0.56	-4.1
3,769,904	+		CCNA_03615	0.58	-4.6
3,769,910	+		CCNA_03615	0.58	-4.7
3,769,933	-		CCNA_03615	0.59	-2.8
3,769,937	+		CCNA_03615	0.59	-5.0
3,769,956	-		CCNA_03615	0.60	-4.8
3,769,958	+		CCNA_03615	0.60	-5.5
3,769,958	+		CCNA_03615	0.60	-3.8
3,769,966	-		CCNA_03615	0.61	-1.2
3,769,966	-		CCNA_03615	0.61	-0.9
3,769,966	-		CCNA_03615	0.61	-3.4
3,769,971	+		CCNA_03615	0.61	-5.2
3,769,988	+		CCNA_03615	0.62	-5.5
3,769,998	+		CCNA_03615	0.62	-4.2
3,770,028	+		CCNA_03615	0.64	-4.6
3,770,028	+		CCNA_03615	0.64	-5.7
3,770,028	+		CCNA_03615	0.64	-4.7
3,770,036	-		CCNA_03615	0.64	-4.7
3,770,036	-		CCNA_03615	0.64	-3.1
3,770,036	-		CCNA_03615	0.64	-1.2
3,770,036	-		CCNA_03615	0.64	-2.1
3,770,060	+		CCNA_03615	0.65	-3.9
3,770,063	-		CCNA_03615	0.65	-2.7
3,770,065	+		CCNA_03615	0.65	-2.7
3,770,087	+		CCNA_03615	0.66	-2.8
3,770,087	+		CCNA_03615	0.66	-4.9
3,770,097	+		CCNA_03615	0.67	-5.4
3,770,155	+		CCNA_03615	0.70	-4.9
3,770,155	+		CCNA_03615	0.70	-3.6
3,770,180	+		CCNA_03615	0.71	-4.3
3,770,180	+		CCNA_03615	0.71	-5.1
3,770,188	-		CCNA_03615	0.71	-1.8
3,770,188	-		CCNA_03615	0.71	-3.2
3,770,198	-		CCNA_03615	0.72	-2.7
3,770,220	+		CCNA_03615	0.73	-1.9
3,770,220	+		CCNA_03615	0.73	-4.0
3,770,220	+		CCNA_03615	0.73	-5.5
3,770,225	+		CCNA_03615	0.73	+1.1
3,770,225	+		CCNA_03615	0.73	-2.8
3,770,233	+		CCNA_03615	0.74	-6.1
3,770,233	+		CCNA_03615	0.74	-3.2
3,770,235	-		CCNA_03615	0.74	-2.6
3,770,238	+		CCNA_03615	0.74	-4.1
3,770,238	+		CCNA_03615	0.74	-6.3
3,770,238	+		CCNA_03615	0.74	-3.4
3,770,238	+		CCNA_03615	0.74	-4.9
3,770,238	+		CCNA_03615	0.74	-2.9
3,770,238	+		CCNA_03615	0.74	-5.5
3,770,238	+		CCNA_03615	0.74	-5.3
3,770,238	+		CCNA_03615	0.74	-5.0
3,770,238	+		CCNA_03615	0.74	-4.5
3,770,238	+		CCNA_03615	0.74	-2.7
3,770,238	+		CCNA_03615	0.74	-4.9
3,770,241	-		CCNA_03615	0.74	-3.7
3,770,246	-		CCNA_03615	0.74	-2.2
3,770,246	-		CCNA_03615	0.74	-0.2
3,770,246	-		CCNA_03615	0.74	-3.0
3,770,246	-		CCNA_03615	0.74	-4.2
3,770,246	-		CCNA_03615	0.74	-3.2
3,770,246	-		CCNA_03615	0.74	-1.6
3,770,246	-		CCNA_03615	0.74	-2.0
3,770,253	+				-0.9
3,770,255	+		CCNA_03615	0.75	-4.2
3,770,262	+		CCNA_03615	0.75	-1.2
3,770,276	-		CCNA_03615	0.76	-4.3
3,770,279	-		CCNA_03615	0.76	-2.2
3,770,281	+		CCNA_03615	0.76	-2.0
3,770,281	-		CCNA_03615	0.76	-1.8
3,770,333	-		CCNA_03615	0.78	-1.5
3,770,347	-		CCNA_03615	0.79	-3.3
3,770,349	+		CCNA_03615	0.79	-4.5
3,770,349	+		CCNA_03615	0.79	-5.1
3,770,349	+		CCNA_03615	0.79	-2.8
3,770,349	+		CCNA_03615	0.79	-4.3
3,770,349	+		CCNA_03615	0.79	-4.8
3,770,349	+		CCNA_03615	0.79	-5.3
3,770,349	+		CCNA_03615	0.79	-5.5
3,770,349	+		CCNA_03615	0.79	-3.6
3,770,349	+		CCNA_03615	0.79	-5.4
3,770,349	+		CCNA_03615	0.79	-4.2
3,770,349	+		CCNA_03615	0.79	-5.1
3,770,349	+		CCNA_03615	0.79	-6.2
3,770,349	+		CCNA_03615	0.79	-4.7
3,770,349	+		CCNA_03615	0.79	-5.0
3,770,349	+		CCNA_03615	0.79	-3.9
3,770,349	+		CCNA_03615	0.79	-4.7
3,770,349	+		CCNA_03615	0.79	-2.8
3,770,349	+		CCNA_03615	0.79	-4.7
3,770,349	+		CCNA_03615	0.79	-5.0
3,770,349	+		CCNA_03615	0.79	-5.3
3,770,349	+		CCNA_03615	0.79	-1.2
3,770,349	+		CCNA_03615	0.79	-5.4
3,770,354	+		CCNA_03615	0.79	-2.4
3,770,357	-		CCNA_03615	0.80	-1.9
3,770,357	-		CCNA_03615	0.80	-2.7
3,770,357	-		CCNA_03615	0.80	-2.6
3,770,357	-		CCNA_03615	0.80	-1.8
3,770,357	-		CCNA_03615	0.80	-2.4
3,770,357	-		CCNA_03615	0.80	-3.2
3,770,357	-		CCNA_03615	0.80	-1.5
3,770,357	-		CCNA_03615	0.80	-3.7
3,770,357	-		CCNA_03615	0.80	-5.6
3,770,357	-		CCNA_03615	0.80	-3.5
3,770,357	-		CCNA_03615	0.80	-3.0
3,770,357	-		CCNA_03615	0.80	-3.2
3,770,357	-		CCNA_03615	0.80	-2.7
3,770,357	-		CCNA_03615	0.80	-3.9
3,770,357	-		CCNA_03615	0.80	-2.4
3,770,357	-		CCNA_03615	0.80	-2.7
3,770,357	-		CCNA_03615	0.80	-1.8
3,770,357	-		CCNA_03615	0.80	-4.9
3,770,357	-		CCNA_03615	0.80	-2.2
3,770,357	-		CCNA_03615	0.80	-3.6
3,770,357	-		CCNA_03615	0.80	-1.7
3,770,357	-		CCNA_03615	0.80	-1.7
3,770,357	-		CCNA_03615	0.80	-1.1
3,770,357	-		CCNA_03615	0.80	-2.7
3,770,362	-		CCNA_03615	0.80	-3.3
3,770,362	-		CCNA_03615	0.80	-4.1
3,770,380	-		CCNA_03615	0.81	-0.9
3,770,385	+		CCNA_03615	0.81	-5.3
3,770,385	+		CCNA_03615	0.81	-4.7
3,770,385	+		CCNA_03615	0.81	-4.1
3,770,390	+		CCNA_03615	0.81	-5.3
3,770,393	-		CCNA_03615	0.81	-2.9
3,770,393	-		CCNA_03615	0.81	-2.4
3,770,399	-		CCNA_03615	0.82	-0.5
3,770,466	+		CCNA_03615	0.85	-5.7
3,770,466	+		CCNA_03615	0.85	-2.8
3,770,467	-		CCNA_03615	0.85	-0.9
3,770,476	+		CCNA_03615	0.85	-2.4
3,770,484	-		CCNA_03615	0.86	-1.9
3,770,499	-		CCNA_03615	0.86	-3.9
3,770,558	-		CCNA_03615	0.89	-1.7
3,770,582	+				-2.6
3,770,619	+				-4.7
3,770,629	+				-5.1
3,770,637	+				-5.7
3,770,656	+				-4.4
3,770,658	-				-1.8
3,770,669	+				-4.5
3,770,677	-				+0.5
3,770,679	+				-2.4
3,770,684	-				-3.5
3,770,686	-				-2.6
3,770,686	-				-2.7
3,770,699	+				-3.1
3,770,699	+				-5.9
3,770,711	+				-4.7
3,770,719	-				-3.1
3,770,748	+				-1.7
3,770,748	+				-2.5
3,770,748	+				-3.5
3,770,756	-				-2.6
3,770,756	-				-2.2
3,770,770	+				-2.1
3,770,832	+				+1.1
3,770,834	-				-0.4
3,770,840	-				-2.6
3,770,877	+				-1.9
3,770,880	-				-1.5
3,770,892	+				-1.7
3,770,944	-				-0.2
3,770,961	+				-3.0
3,770,974	+				-2.4
3,770,982	-				-2.7
3,770,982	-				-2.3
3,770,984	+				-1.4
3,770,992	-		CCNA_03616	0.10	-1.2
3,771,052	-		CCNA_03616	0.15	+0.6
3,771,053	-		CCNA_03616	0.15	-1.5
3,771,067	+		CCNA_03616	0.16	-1.5
3,771,118	-		CCNA_03616	0.19	-2.1
3,771,118	-		CCNA_03616	0.19	-2.2
3,771,136	+		CCNA_03616	0.20	-3.6
3,771,146	+		CCNA_03616	0.21	-1.6
3,771,154	-		CCNA_03616	0.22	-1.9
3,771,154	-		CCNA_03616	0.22	-2.7
3,771,158	+		CCNA_03616	0.22	-2.4
3,771,158	+		CCNA_03616	0.22	-0.5
3,771,166	+		CCNA_03616	0.23	-0.0
3,771,166	-		CCNA_03616	0.23	-1.2
3,771,166	-		CCNA_03616	0.23	-0.2
3,771,167	-		CCNA_03616	0.23	-0.6
3,771,180	+		CCNA_03616	0.24	-3.3
3,771,207	+		CCNA_03616	0.25	+0.7
3,771,209	+		CCNA_03616	0.26	-0.7
3,771,217	-		CCNA_03616	0.26	-0.5
3,771,217	-		CCNA_03616	0.26	+1.1
3,771,222	-		CCNA_03616	0.27	-3.1
3,771,224	+		CCNA_03616	0.27	-1.0
3,771,234	+		CCNA_03616	0.27	-1.0
3,771,254	+		CCNA_03616	0.29	-0.9
3,771,262	+		CCNA_03616	0.29	-2.0
3,771,262	-		CCNA_03616	0.29	-1.2
3,771,262	-		CCNA_03616	0.29	-2.6
3,771,290	-		CCNA_03616	0.31	-2.4
3,771,321	+		CCNA_03616	0.34	-2.5
3,771,353	-		CCNA_03616	0.36	-0.9
3,771,413	+		CCNA_03616	0.40	-0.8
3,771,413	+		CCNA_03616	0.40	-0.2
3,771,483	+		CCNA_03616	0.45	-1.3
3,771,483	+		CCNA_03616	0.45	-1.5
3,771,483	+		CCNA_03616	0.45	+2.1
3,771,498	+		CCNA_03616	0.46	-3.5
3,771,526	+		CCNA_03616	0.48	-0.9
3,771,529	+		CCNA_03616	0.48	-1.0
3,771,532	-		CCNA_03616	0.48	-2.5
3,771,575	+		CCNA_03616	0.52	-0.5
3,771,597	+		CCNA_03616	0.53	-1.0
3,771,612	+		CCNA_03616	0.54	-2.6
3,771,613	-		CCNA_03616	0.54	-0.7
3,771,617	+		CCNA_03616	0.54	-0.8
3,771,617	+		CCNA_03616	0.54	-1.1
3,771,617	+		CCNA_03616	0.54	-1.3
3,771,617	+		CCNA_03616	0.54	-1.1
3,771,625	-		CCNA_03616	0.55	-2.7
3,771,625	-		CCNA_03616	0.55	-0.9
3,771,625	-		CCNA_03616	0.55	-1.1
3,771,625	-		CCNA_03616	0.55	-2.8
3,771,625	-		CCNA_03616	0.55	-1.6
3,771,632	+		CCNA_03616	0.56	+0.1
3,771,632	+		CCNA_03616	0.56	-0.6
3,771,632	-		CCNA_03616	0.56	+0.1
3,771,640	-		CCNA_03616	0.56	-2.8
3,771,647	+		CCNA_03616	0.57	-0.4
3,771,683	-		CCNA_03616	0.59	-2.7
3,771,698	+		CCNA_03616	0.60	+0.1
3,771,752	+		CCNA_03616	0.64	-2.0
3,771,754	-		CCNA_03616	0.64	-0.8
3,771,778	+		CCNA_03616	0.66	-2.4
3,771,778	+		CCNA_03616	0.66	-1.7
3,771,778	+		CCNA_03616	0.66	-0.9
3,771,786	-		CCNA_03616	0.66	-0.7
3,771,788	+		CCNA_03616	0.67	-2.3
3,771,794	+		CCNA_03616	0.67	-2.5
3,771,797	-		CCNA_03616	0.67	-0.3
3,771,840	-		CCNA_03616	0.70	-0.7
3,771,846	+		CCNA_03616	0.71	-0.1
3,771,854	-		CCNA_03616	0.71	-3.1
3,771,854	-		CCNA_03616	0.71	-2.1
3,771,861	+		CCNA_03616	0.72	-0.2
3,771,869	-		CCNA_03616	0.72	-2.0
3,771,883	+		CCNA_03616	0.73	+1.1
3,771,921	-		CCNA_03616	0.76	-1.9
3,771,952	+		CCNA_03616	0.78	-1.0
3,771,954	-		CCNA_03616	0.78	-0.6
3,771,978	-		CCNA_03616	0.80	+1.0
3,771,992	+		CCNA_03616	0.81	+0.2
3,771,992	+		CCNA_03616	0.81	-0.6
3,772,000	-		CCNA_03616	0.82	-1.9
3,772,000	-		CCNA_03616	0.82	-2.9
3,772,065	+		CCNA_03616	0.86	-0.6
3,772,065	+		CCNA_03616	0.86	+0.5
3,772,065	+				+0.3
3,772,083	-		CCNA_03616	0.87	-0.9
3,772,105	+		CCNA_03616	0.89	+0.6
3,772,118	-				-1.4
3,772,134	-				-1.2
3,772,168	+				-0.1
3,772,168	+				+0.5
3,772,169	-				-0.3
3,772,178	-				+0.9
3,772,204	+				-1.0
3,772,212	-				-1.4
3,772,212	-				-1.9
3,772,218	-				-0.4
3,772,218	-				-0.1
3,772,218	-				-0.9
3,772,247	+				-2.5
3,772,247	+				-1.0
3,772,269	+				-4.3
3,772,269	+				-3.9
3,772,269	+				-5.2
3,772,269	+				-4.7
3,772,277	-				-2.3
3,772,277	-				-1.4
3,772,287	-				-0.9
3,772,299	+				-4.2
3,772,303	+				-5.6
3,772,311	-		CCNA_03617	0.11	+0.5
3,772,334	-		CCNA_03617	0.16	+0.1
3,772,343	+				+0.5
3,772,349	+		CCNA_03617	0.19	-3.4
3,772,390	-		CCNA_03617	0.28	-3.0
3,772,395	+		CCNA_03617	0.29	-5.0
3,772,395	+		CCNA_03617	0.29	-2.8
3,772,395	+		CCNA_03617	0.29	-4.9
3,772,465	+				-0.7
3,772,484	-		CCNA_03617	0.49	-1.6
3,772,528	-		CCNA_03617	0.58	-1.6
3,772,543	+		CCNA_03617	0.62	-4.3
3,772,543	+		CCNA_03617	0.62	-3.7
3,772,581	-		CCNA_03617	0.70	-3.9
3,772,611	-		CCNA_03617	0.77	-5.0
3,772,622	+		CCNA_03617	0.79	-4.0
3,772,644	+		CCNA_03617	0.84	-5.0
3,772,645	+		CCNA_03617	0.84	-2.7
3,772,654	+		CCNA_03617	0.86	-6.3
3,772,662	-		CCNA_03617	0.88	-4.8
3,772,662	-		CCNA_03617	0.88	-3.9
3,772,672	+				-2.8
3,772,711	+				-1.8
3,772,729	+				-3.3
3,772,729	+				-2.4
3,772,737	-				-1.5
3,772,737	-				-3.5
3,772,742	-				-2.7
3,772,742	-				-1.8
3,772,751	+				-1.6
3,772,769	+				-2.3
3,772,772	+				-2.3
3,772,797	+		CCNA_03618	0.14	-2.6
3,772,809	+		CCNA_03618	0.16	-4.7
3,772,815	-		CCNA_03618	0.17	-0.5
3,772,916	+		CCNA_03618	0.35	-1.9
3,772,916	+		CCNA_03618	0.35	-1.7
3,772,916	+		CCNA_03618	0.35	-2.7
3,772,931	+		CCNA_03618	0.37	-2.6
3,772,967	-		CCNA_03618	0.44	-2.1
3,772,971	+		CCNA_03618	0.44	-1.9
3,772,982	+		CCNA_03618	0.46	-2.4
3,772,989	+		CCNA_03618	0.47	-2.6
3,772,999	+		CCNA_03618	0.49	-0.8
3,772,999	+		CCNA_03618	0.49	-3.6
3,773,007	-		CCNA_03618	0.51	-1.9
3,773,007	-		CCNA_03618	0.51	-0.8
3,773,040	+		CCNA_03618	0.56	-3.1
3,773,040	+		CCNA_03618	0.56	-1.6
3,773,044	+		CCNA_03618	0.57	-2.2
3,773,045	+		CCNA_03618	0.57	-1.6
3,773,045	+		CCNA_03618	0.57	-2.2
3,773,048	-		CCNA_03618	0.58	+0.8
3,773,048	-		CCNA_03618	0.58	-2.7
3,773,068	-		CCNA_03618	0.61	+0.1
3,773,075	+		CCNA_03618	0.62	-2.9
3,773,083	-		CCNA_03618	0.64	-1.4
3,773,115	+		CCNA_03618	0.69	-2.5
3,773,129	-		CCNA_03618	0.72	-2.1
3,773,153	-		CCNA_03618	0.76	-1.1
3,773,250	+				-3.5
3,773,251	+				-3.0