Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03574

Experiment: PYE_noCalcium 25C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep3 12 days
3,726,777	-		CCNA_03573	0.52	+0.4
3,726,808	+		CCNA_03573	0.53	-2.7
3,726,815	-		CCNA_03573	0.54	-0.5
3,726,830	-		CCNA_03573	0.55	-0.7
3,726,875	-		CCNA_03573	0.57	-0.4
3,726,931	+		CCNA_03573	0.60	-0.4
3,726,936	+		CCNA_03573	0.61	-0.1
3,726,967	+		CCNA_03573	0.62	-2.4
3,726,972	+		CCNA_03573	0.63	-0.7
3,726,980	-		CCNA_03573	0.63	+1.0
3,726,985	-		CCNA_03573	0.63	+0.8
3,726,987	+		CCNA_03573	0.64	-1.1
3,727,008	+		CCNA_03573	0.65	-0.5
3,727,010	+		CCNA_03573	0.65	+0.1
3,727,010	+		CCNA_03573	0.65	-0.2
3,727,010	+		CCNA_03573	0.65	+1.1
3,727,018	-		CCNA_03573	0.65	-2.4
3,727,018	-		CCNA_03573	0.65	-1.5
3,727,018	-		CCNA_03573	0.65	-1.7
3,727,035	+		CCNA_03573	0.66	-1.2
3,727,035	+		CCNA_03573	0.66	+1.0
3,727,043	-		CCNA_03573	0.67	-0.5
3,727,043	-		CCNA_03573	0.67	+1.0
3,727,234	+		CCNA_03573	0.78	-2.8
3,727,242	-		CCNA_03573	0.78	+1.2
3,727,242	-		CCNA_03573	0.78	+0.2
3,727,242	-		CCNA_03573	0.78	-0.6
3,727,274	+		CCNA_03573	0.80	-1.2
3,727,274	-		CCNA_03573	0.80	-1.3
3,727,296	+		CCNA_03573	0.81	+0.5
3,727,304	-		CCNA_03573	0.82	-0.3
3,727,304	-		CCNA_03573	0.82	+2.4
3,727,318	+		CCNA_03573	0.83	-2.0
3,727,328	+		CCNA_03573	0.83	-0.2
3,727,463	+				-0.9
3,727,471	-				+0.6
3,727,535	-				-0.2
3,727,546	+				-0.9
3,727,553	+				+0.2
3,727,572	+				-1.8
3,727,572	+				-1.7
3,727,572	+				-0.1
3,727,580	-				-1.7
3,727,580	-				-0.1
3,727,609	-				-0.6
3,727,618	+				+0.5
3,727,625	-				-1.0
3,727,723	-				-1.4
3,727,730	-				-1.7
3,727,730	-				-2.4
3,727,732	+				-3.4
3,727,735	-				-2.3
3,727,763	+				-0.2
3,727,771	-				-1.9
3,727,771	-				-4.4
3,727,781	+				-1.4
3,727,797	-				-0.5
3,727,811	-				-4.1
3,727,828	+				-1.1
3,727,836	-				-2.9
3,727,836	-				-4.1
3,727,856	+				+1.1
3,727,860	+				-2.4
3,727,869	-				-2.8
3,727,877	+				-2.4
3,727,887	+				+0.5
3,727,904	-				-1.5
3,727,906	+				-1.9
3,727,930	-				-1.9
3,727,952	-				+2.1
3,727,954	+				-4.4
3,727,961	-				-3.4
3,727,973	-				-3.2
3,728,028	+		CCNA_03574	0.12	-0.7
3,728,028	+		CCNA_03574	0.12	-1.6
3,728,033	+				-0.9
3,728,033	+		CCNA_03574	0.12	-3.0
3,728,041	-				-1.2
3,728,041	-		CCNA_03574	0.13	-5.2
3,728,079	+		CCNA_03574	0.14	-3.0
3,728,079	+		CCNA_03574	0.14	-1.6
3,728,086	+		CCNA_03574	0.14	-0.9
3,728,087	-		CCNA_03574	0.14	-2.4
3,728,103	+		CCNA_03574	0.15	+0.5
3,728,104	+		CCNA_03574	0.15	-2.2
3,728,111	-		CCNA_03574	0.15	-3.1
3,728,116	-		CCNA_03574	0.16	-3.3
3,728,133	-		CCNA_03574	0.16	-3.3
3,728,141	-		CCNA_03574	0.17	-0.4
3,728,170	+		CCNA_03574	0.18	-2.4
3,728,196	-		CCNA_03574	0.19	-3.7
3,728,254	+		CCNA_03574	0.21	+0.5
3,728,276	+		CCNA_03574	0.22	-1.2
3,728,290	+		CCNA_03574	0.23	-1.5
3,728,290	+		CCNA_03574	0.23	-3.6
3,728,290	+		CCNA_03574	0.23	-4.6
3,728,298	-		CCNA_03574	0.23	-2.2
3,728,304	-		CCNA_03574	0.23	-2.7
3,728,309	-		CCNA_03574	0.24	-4.9
3,728,319	-		CCNA_03574	0.24	-1.5
3,728,321	-		CCNA_03574	0.24	-2.3
3,728,346	+		CCNA_03574	0.25	+0.1
3,728,394	+		CCNA_03574	0.27	+2.1
3,728,402	-		CCNA_03574	0.28	-1.0
3,728,407	-		CCNA_03574	0.28	+0.1
3,728,415	-		CCNA_03574	0.28	-1.5
3,728,421	+		CCNA_03574	0.28	-2.5
3,728,439	+		CCNA_03574	0.29	-0.7
3,728,483	-		CCNA_03574	0.31	-1.4
3,728,490	+		CCNA_03574	0.31	-2.1
3,728,490	+		CCNA_03574	0.31	-2.7
3,728,490	+		CCNA_03574	0.31	-1.2
3,728,490	+		CCNA_03574	0.31	-2.7
3,728,490	+		CCNA_03574	0.31	-0.7
3,728,490	+		CCNA_03574	0.31	-2.2
3,728,490	+		CCNA_03574	0.31	-2.4
3,728,490	+		CCNA_03574	0.31	-2.1
3,728,490	+		CCNA_03574	0.31	-3.3
3,728,490	+		CCNA_03574	0.31	-1.1
3,728,493	-		CCNA_03574	0.31	-3.2
3,728,495	+		CCNA_03574	0.31	-2.1
3,728,498	-		CCNA_03574	0.32	-0.7
3,728,498	-		CCNA_03574	0.32	-1.2
3,728,498	-		CCNA_03574	0.32	-3.2
3,728,498	-		CCNA_03574	0.32	-2.1
3,728,498	-		CCNA_03574	0.32	-2.5
3,728,498	-		CCNA_03574	0.32	+0.1
3,728,498	-		CCNA_03574	0.32	-1.6
3,728,498	-		CCNA_03574	0.32	-4.4
3,728,498	-		CCNA_03574	0.32	-2.2
3,728,498	-		CCNA_03574	0.32	-1.2
3,728,498	-		CCNA_03574	0.32	-0.5
3,728,498	-		CCNA_03574	0.32	-3.0
3,728,498	-		CCNA_03574	0.32	-0.2
3,728,498	-		CCNA_03574	0.32	-1.4
3,728,498	-		CCNA_03574	0.32	-2.5
3,728,498	-		CCNA_03574	0.32	-2.1
3,728,498	-		CCNA_03574	0.32	-0.2
3,728,522	-		CCNA_03574	0.33	+0.1
3,728,588	+		CCNA_03574	0.35	+0.1
3,728,588	+		CCNA_03574	0.35	-0.2
3,728,596	-		CCNA_03574	0.36	-0.9
3,728,596	-		CCNA_03574	0.36	-0.9
3,728,596	-		CCNA_03574	0.36	-2.1
3,728,596	-		CCNA_03574	0.36	-2.2
3,728,596	-		CCNA_03574	0.36	+0.1
3,728,596	-		CCNA_03574	0.36	-2.9
3,728,612	+		CCNA_03574	0.36	-3.6
3,728,612	+		CCNA_03574	0.36	-2.3
3,728,631	+		CCNA_03574	0.37	-4.2
3,728,649	-		CCNA_03574	0.38	-1.1
3,728,743	+		CCNA_03574	0.42	-0.7
3,728,749	-		CCNA_03574	0.42	-0.7
3,728,751	-		CCNA_03574	0.42	-2.4
3,728,756	-		CCNA_03574	0.42	-2.1
3,728,797	+		CCNA_03574	0.44	-0.7
3,728,869	+		CCNA_03574	0.47	-2.6
3,728,876	-		CCNA_03574	0.47	-2.7
3,728,876	-		CCNA_03574	0.47	-2.2
3,728,911	-		CCNA_03574	0.49	-3.3
3,728,914	+		CCNA_03574	0.49	-5.0
3,728,921	+		CCNA_03574	0.49	-0.9
3,728,944	+		CCNA_03574	0.50	-1.6
3,728,955	-		CCNA_03574	0.51	-1.1
3,728,975	-		CCNA_03574	0.51	-0.9
3,728,987	-		CCNA_03574	0.52	-0.5
3,728,992	-		CCNA_03574	0.52	-2.4
3,728,999	+		CCNA_03574	0.52	-0.2
3,729,013	-		CCNA_03574	0.53	-1.5
3,729,023	+		CCNA_03574	0.53	-1.1
3,729,023	+		CCNA_03574	0.53	+0.8
3,729,046	-		CCNA_03574	0.54	-2.1
3,729,065	-		CCNA_03574	0.55	-0.7
3,729,113	+		CCNA_03574	0.57	-0.7
3,729,141	+		CCNA_03574	0.58	-1.6
3,729,141	+		CCNA_03574	0.58	-1.1
3,729,141	+		CCNA_03574	0.58	-2.7
3,729,141	+		CCNA_03574	0.58	-1.7
3,729,141	+		CCNA_03574	0.58	+1.1
3,729,141	+		CCNA_03574	0.58	-3.1
3,729,141	+		CCNA_03574	0.58	-1.7
3,729,146	+		CCNA_03574	0.59	-3.1
3,729,146	+				-0.9
3,729,149	-		CCNA_03574	0.59	-0.7
3,729,149	-		CCNA_03574	0.59	-3.0
3,729,149	-		CCNA_03574	0.59	-1.8
3,729,149	-		CCNA_03574	0.59	-0.2
3,729,149	-		CCNA_03574	0.59	+1.1
3,729,154	-		CCNA_03574	0.59	+0.5
3,729,160	+		CCNA_03574	0.59	+1.1
3,729,168	-		CCNA_03574	0.59	-2.7
3,729,235	+		CCNA_03574	0.62	-1.8
3,729,243	-		CCNA_03574	0.63	-1.4
3,729,245	+		CCNA_03574	0.63	-2.8
3,729,250	+		CCNA_03574	0.63	-0.7
3,729,295	-		CCNA_03574	0.65	-1.1
3,729,347	+		CCNA_03574	0.67	-0.5
3,729,355	-		CCNA_03574	0.67	-1.2
3,729,360	-		CCNA_03574	0.67	-2.0
3,729,360	-		CCNA_03574	0.67	+0.1
3,729,371	+		CCNA_03574	0.68	-1.1
3,729,432	+		CCNA_03574	0.70	-1.6
3,729,532	+		CCNA_03574	0.75	-3.8
3,729,532	+		CCNA_03574	0.75	-1.7
3,729,534	+		CCNA_03574	0.75	-3.2
3,729,540	-		CCNA_03574	0.75	+2.1
3,729,568	+		CCNA_03574	0.76	-2.4
3,729,577	-		CCNA_03574	0.76	-2.6
3,729,579	+		CCNA_03574	0.77	+2.1
3,729,579	+		CCNA_03574	0.77	-1.5
3,729,608	+		CCNA_03574	0.78	-2.2
3,729,615	-		CCNA_03574	0.78	-2.6
3,729,617	+		CCNA_03574	0.78	-1.4
3,729,640	-		CCNA_03574	0.79	-1.9
3,729,658	-		CCNA_03574	0.80	-2.8
3,729,658	-		CCNA_03574	0.80	-2.5
3,729,663	-		CCNA_03574	0.80	+0.9
3,729,669	+		CCNA_03574	0.80	-2.2
3,729,681	+		CCNA_03574	0.81	-2.0
3,729,688	+		CCNA_03574	0.81	+1.1
3,729,699	+		CCNA_03574	0.82	-2.3
3,729,761	+		CCNA_03574	0.84	-2.5
3,729,803	+		CCNA_03574	0.86	-3.7
3,729,811	-		CCNA_03574	0.86	-2.9
3,729,840	+		CCNA_03574	0.87	-3.3
3,729,853	-		CCNA_03574	0.88	-3.2
3,729,866	-		CCNA_03574	0.88	-4.7
3,729,866	-		CCNA_03574	0.88	-1.9
3,729,959	-				-4.5
3,729,963	+				+1.1
3,729,963	+				+0.5
3,729,963	+				+0.1
3,729,971	-				-1.9
3,729,971	-				-2.4
3,729,971	-				-3.3
3,730,095	+				-1.9
3,730,125	+				-3.4
3,730,202	+				-0.2
3,730,208	-				-2.6
3,730,300	-				-1.2
3,730,313	+				-1.1
3,730,356	+				-1.6
3,730,356	+				-1.3
3,730,356	+				-0.1
3,730,356	+				-0.7
3,730,357	+				-1.8
3,730,364	-				-0.8
3,730,364	-				-2.1
3,730,364	-				-1.6
3,730,364	-				-0.6
3,730,364	-				-1.8
3,730,365	-				+0.5
3,730,365	-				-0.5
3,730,444	+				-1.3
3,730,449	+				-0.0
3,730,457	-				-0.3
3,730,457	-				-0.1
3,730,512	+				-0.7
3,730,527	-		CCNA_03575	0.10	-3.4
3,730,552	-		CCNA_03575	0.12	-0.3
3,730,564	+		CCNA_03575	0.13	+0.8
3,730,564	+		CCNA_03575	0.13	-0.2
3,730,569	+		CCNA_03575	0.14	+0.3
3,730,572	-		CCNA_03575	0.14	-1.6
3,730,572	-		CCNA_03575	0.14	+0.4
3,730,572	-		CCNA_03575	0.14	+0.9
3,730,572	-		CCNA_03575	0.14	+0.3
3,730,572	-		CCNA_03575	0.14	+0.3
3,730,572	-		CCNA_03575	0.14	-1.6
3,730,572	-		CCNA_03575	0.14	-0.5
3,730,572	-		CCNA_03575	0.14	-3.0
3,730,572	-		CCNA_03575	0.14	-1.1
3,730,578	-		CCNA_03575	0.14	-1.8
3,730,588	-		CCNA_03575	0.15	-0.9
3,730,592	+		CCNA_03575	0.15	-0.3
3,730,605	-		CCNA_03575	0.17	-3.5
3,730,654	+		CCNA_03575	0.21	-0.4
3,730,654	+		CCNA_03575	0.21	-2.3
3,730,661	+		CCNA_03575	0.21	-1.3
3,730,687	-		CCNA_03575	0.23	+0.4
3,730,709	+		CCNA_03575	0.25	-0.3
3,730,730	+		CCNA_03575	0.27	-0.1
3,730,789	+		CCNA_03575	0.32	-0.8
3,730,828	-		CCNA_03575	0.35	-1.2
3,730,863	-		CCNA_03575	0.38	+0.5
3,730,921	+		CCNA_03575	0.43	-0.9
3,730,924	-		CCNA_03575	0.43	-1.6
3,730,968	+		CCNA_03575	0.47	-1.2
3,730,976	-		CCNA_03575	0.48	+0.7
3,730,976	-		CCNA_03575	0.48	-1.6
3,731,016	+		CCNA_03575	0.51	+1.1
3,731,032	+		CCNA_03575	0.53	-0.9
3,731,042	-		CCNA_03575	0.53	+0.3
3,731,095	+		CCNA_03575	0.58	+0.6
3,731,103	-		CCNA_03575	0.59	+1.5
3,731,106	+		CCNA_03575	0.59	-0.0
3,731,106	+		CCNA_03575	0.59	-0.4
3,731,121	+		CCNA_03575	0.60	-0.4
3,731,125	-		CCNA_03575	0.60	+0.1