Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03444

Experiment: PYE_noCalcium 25C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep3 12 days
3,605,319	+				+1.3
3,605,383	+		CCNA_03443	0.16	+1.2
3,605,391	-		CCNA_03443	0.18	+0.3
3,605,413	+		CCNA_03443	0.22	-0.1
3,605,415	+		CCNA_03443	0.23	-0.7
3,605,423	-		CCNA_03443	0.24	-0.2
3,605,425	-		CCNA_03443	0.25	+1.2
3,605,427	+				+1.2
3,605,427	+		CCNA_03443	0.25	-0.4
3,605,427	+				-0.8
3,605,427	+		CCNA_03443	0.25	+0.2
3,605,430	-		CCNA_03443	0.26	+1.1
3,605,435	-		CCNA_03443	0.27	+1.0
3,605,435	-		CCNA_03443	0.27	-0.6
3,605,435	-		CCNA_03443	0.27	-0.3
3,605,437	-		CCNA_03443	0.27	-0.6
3,605,456	-		CCNA_03443	0.31	-1.0
3,605,457	-		CCNA_03443	0.31	+1.0
3,605,457	-		CCNA_03443	0.31	-1.2
3,605,465	+		CCNA_03443	0.33	-1.1
3,605,465	+		CCNA_03443	0.33	+0.1
3,605,507	+		CCNA_03443	0.42	-0.4
3,605,514	+		CCNA_03443	0.43	+2.2
3,605,528	+		CCNA_03443	0.46	+0.9
3,605,533	+		CCNA_03443	0.47	-1.0
3,605,541	-				-0.6
3,605,552	+		CCNA_03443	0.51	+1.2
3,605,582	-		CCNA_03443	0.57	-0.6
3,605,598	+		CCNA_03443	0.61	-0.1
3,605,639	+		CCNA_03443	0.69	-0.1
3,605,641	-		CCNA_03443	0.70	-2.5
3,605,674	-		CCNA_03443	0.76	+0.5
3,605,730	-		CCNA_03443	0.88	-0.1
3,605,767	+				+0.3
3,605,780	-				-0.5
3,605,793	+				-0.6
3,605,793	+				-0.4
3,605,793	+				+0.6
3,605,793	+				-0.4
3,605,793	+				+2.2
3,605,793	+				-0.1
3,605,793	+				+1.2
3,605,793	+				-0.8
3,605,793	+				-0.1
3,605,793	+				+1.2
3,605,799	-				+1.4
3,605,801	-				-0.2
3,605,801	-				+0.2
3,605,801	-				-0.9
3,605,801	-				-0.5
3,605,801	-				-0.8
3,605,872	+				-1.5
3,605,928	+				-0.6
3,605,936	-				-1.1
3,606,004	-				-0.1
3,606,043	+				-0.6
3,606,065	+				-3.5
3,606,082	-				-0.8
3,606,095	+				-2.2
3,606,100	+				-2.6
3,606,111	+				-2.0
3,606,132	+				-1.0
3,606,132	+				-2.0
3,606,154	-				+2.2
3,606,167	-				-1.9
3,606,173	-				-0.1
3,606,220	-				-1.1
3,606,234	+				-3.1
3,606,276	+		CCNA_03444	0.10	-0.6
3,606,284	-		CCNA_03444	0.10	-0.1
3,606,293	-		CCNA_03444	0.11	-1.1
3,606,405	+				-0.4
3,606,423	-		CCNA_03444	0.16	-3.3
3,606,431	-		CCNA_03444	0.16	-0.1
3,606,440	+		CCNA_03444	0.17	-2.0
3,606,450	-		CCNA_03444	0.17	-2.4
3,606,450	-		CCNA_03444	0.17	-2.1
3,606,474	-		CCNA_03444	0.18	-3.4
3,606,501	-		CCNA_03444	0.19	-1.6
3,606,525	+		CCNA_03444	0.20	-2.1
3,606,537	+		CCNA_03444	0.20	-2.7
3,606,542	+		CCNA_03444	0.21	-0.8
3,606,549	+		CCNA_03444	0.21	-1.5
3,606,586	+		CCNA_03444	0.22	-1.4
3,606,606	+		CCNA_03444	0.23	-1.5
3,606,671	-		CCNA_03444	0.26	-0.3
3,606,697	+		CCNA_03444	0.27	+0.4
3,606,707	+		CCNA_03444	0.27	-1.1
3,606,715	+		CCNA_03444	0.28	-0.6
3,606,715	+		CCNA_03444	0.28	-3.5
3,606,715	+		CCNA_03444	0.28	-1.1
3,606,715	+		CCNA_03444	0.28	-1.7
3,606,715	-		CCNA_03444	0.28	+1.5
3,606,723	-		CCNA_03444	0.28	-0.1
3,606,727	+		CCNA_03444	0.28	-0.5
3,606,750	-		CCNA_03444	0.29	-3.5
3,606,790	-		CCNA_03444	0.31	-2.1
3,606,790	-		CCNA_03444	0.31	-2.1
3,606,797	+		CCNA_03444	0.31	-0.6
3,606,818	+		CCNA_03444	0.32	+1.2
3,606,818	+		CCNA_03444	0.32	-2.1
3,606,818	+		CCNA_03444	0.32	+0.9
3,606,823	+		CCNA_03444	0.32	-1.0
3,606,826	-		CCNA_03444	0.32	-1.4
3,606,826	-		CCNA_03444	0.32	-0.6
3,606,831	-		CCNA_03444	0.32	-0.1
3,606,831	-		CCNA_03444	0.32	+0.6
3,606,856	-		CCNA_03444	0.33	-1.7
3,606,857	-		CCNA_03444	0.33	+0.2
3,606,880	+		CCNA_03444	0.34	-1.0
3,606,946	+		CCNA_03444	0.37	-1.8
3,606,946	+		CCNA_03444	0.37	-0.9
3,607,037	+		CCNA_03444	0.40	-3.1
3,607,037	+		CCNA_03444	0.40	-1.6
3,607,037	+		CCNA_03444	0.40	-1.8
3,607,045	-		CCNA_03444	0.41	-0.8
3,607,045	-		CCNA_03444	0.41	-1.3
3,607,045	-		CCNA_03444	0.41	+0.6
3,607,045	-		CCNA_03444	0.41	+1.2
3,607,045	-		CCNA_03444	0.41	+0.2
3,607,045	-		CCNA_03444	0.41	-0.6
3,607,045	-		CCNA_03444	0.41	+0.6
3,607,098	+		CCNA_03444	0.43	-0.6
3,607,106	-		CCNA_03444	0.43	-1.0
3,607,119	+		CCNA_03444	0.44	-0.3
3,607,125	+		CCNA_03444	0.44	-2.7
3,607,127	-		CCNA_03444	0.44	+0.0
3,607,193	+		CCNA_03444	0.47	-2.1
3,607,193	+		CCNA_03444	0.47	-1.9
3,607,201	-		CCNA_03444	0.47	-1.4
3,607,201	-		CCNA_03444	0.47	-1.3
3,607,235	-		CCNA_03444	0.48	-2.4
3,607,246	-		CCNA_03444	0.49	+0.2
3,607,258	-		CCNA_03444	0.49	-0.7
3,607,258	-		CCNA_03444	0.49	-2.1
3,607,258	-		CCNA_03444	0.49	-3.1
3,607,260	+		CCNA_03444	0.49	-0.8
3,607,304	+		CCNA_03444	0.51	-2.2
3,607,304	+		CCNA_03444	0.51	-0.9
3,607,304	+		CCNA_03444	0.51	-1.9
3,607,304	+		CCNA_03444	0.51	-3.8
3,607,312	-		CCNA_03444	0.51	+0.6
3,607,312	-		CCNA_03444	0.51	-2.2
3,607,312	-		CCNA_03444	0.51	+0.2
3,607,339	+		CCNA_03444	0.52	-3.5
3,607,341	+		CCNA_03444	0.52	-3.8
3,607,343	-		CCNA_03444	0.53	-0.6
3,607,348	-		CCNA_03444	0.53	-1.8
3,607,354	-		CCNA_03444	0.53	-0.0
3,607,372	+		CCNA_03444	0.54	+0.0
3,607,405	-		CCNA_03444	0.55	+0.6
3,607,422	+		CCNA_03444	0.56	-3.1
3,607,424	+		CCNA_03444	0.56	-1.9
3,607,444	+		CCNA_03444	0.57	-1.1
3,607,444	+		CCNA_03444	0.57	-0.9
3,607,444	+		CCNA_03444	0.57	-1.3
3,607,444	+		CCNA_03444	0.57	-2.1
3,607,444	+		CCNA_03444	0.57	-0.7
3,607,444	+		CCNA_03444	0.57	-2.9
3,607,444	+		CCNA_03444	0.57	-1.1
3,607,444	+		CCNA_03444	0.57	-1.0
3,607,444	+		CCNA_03444	0.57	-0.8
3,607,444	+		CCNA_03444	0.57	-2.9
3,607,444	+		CCNA_03444	0.57	-1.1
3,607,444	+		CCNA_03444	0.57	-1.0
3,607,444	+		CCNA_03444	0.57	-1.3
3,607,444	+		CCNA_03444	0.57	-1.7
3,607,444	+		CCNA_03444	0.57	+0.2
3,607,452	-		CCNA_03444	0.57	-0.9
3,607,452	-		CCNA_03444	0.57	-0.1
3,607,452	-		CCNA_03444	0.57	-0.5
3,607,452	-		CCNA_03444	0.57	-0.1
3,607,452	-		CCNA_03444	0.57	-0.1
3,607,452	-		CCNA_03444	0.57	-0.8
3,607,452	-		CCNA_03444	0.57	-1.7
3,607,452	-		CCNA_03444	0.57	+1.2
3,607,452	-		CCNA_03444	0.57	-0.1
3,607,452	-		CCNA_03444	0.57	+1.8
3,607,452	-		CCNA_03444	0.57	+1.2
3,607,452	-				+0.2
3,607,452	-		CCNA_03444	0.57	-2.2
3,607,452	-		CCNA_03444	0.57	-0.4
3,607,477	+		CCNA_03444	0.58	-2.0
3,607,477	+		CCNA_03444	0.58	-1.9
3,607,478	+		CCNA_03444	0.58	-1.7
3,607,489	+		CCNA_03444	0.58	-1.4
3,607,491	+		CCNA_03444	0.58	-2.3
3,607,517	+		CCNA_03444	0.59	-0.2
3,607,517	+		CCNA_03444	0.59	-3.5
3,607,517	+		CCNA_03444	0.59	-2.1
3,607,517	+		CCNA_03444	0.59	-1.7
3,607,517	+		CCNA_03444	0.59	-1.9
3,607,517	+		CCNA_03444	0.59	-2.4
3,607,517	+		CCNA_03444	0.59	-2.6
3,607,525	-		CCNA_03444	0.60	-0.6
3,607,525	-		CCNA_03444	0.60	-2.3
3,607,525	-		CCNA_03444	0.60	+0.9
3,607,525	-		CCNA_03444	0.60	-1.2
3,607,525	-		CCNA_03444	0.60	-0.7
3,607,525	-		CCNA_03444	0.60	-1.1
3,607,525	-		CCNA_03444	0.60	-1.7
3,607,525	-		CCNA_03444	0.60	-3.0
3,607,525	-		CCNA_03444	0.60	-1.9
3,607,556	+		CCNA_03444	0.61	-1.4
3,607,583	-		CCNA_03444	0.62	-1.4
3,607,598	-		CCNA_03444	0.63	-0.2
3,607,600	+		CCNA_03444	0.63	-1.6
3,607,600	+		CCNA_03444	0.63	-1.1
3,607,608	-		CCNA_03444	0.63	-1.3
3,607,626	-		CCNA_03444	0.64	-0.4
3,607,658	+		CCNA_03444	0.65	-1.7
3,607,660	-		CCNA_03444	0.65	-0.6
3,607,660	-		CCNA_03444	0.65	-2.8
3,607,671	+		CCNA_03444	0.66	-1.2
3,607,679	+		CCNA_03444	0.66	-1.6
3,607,705	-		CCNA_03444	0.67	-1.0
3,607,710	+		CCNA_03444	0.67	-1.1
3,607,716	-		CCNA_03444	0.67	-0.6
3,607,718	-		CCNA_03444	0.67	+0.2
3,607,722	-		CCNA_03444	0.68	-0.6
3,607,731	+		CCNA_03444	0.68	-1.5
3,607,731	+		CCNA_03444	0.68	-2.1
3,607,731	+		CCNA_03444	0.68	-1.3
3,607,731	+		CCNA_03444	0.68	-0.9
3,607,771	-		CCNA_03444	0.70	-0.4
3,607,794	+		CCNA_03444	0.70	-0.4
3,607,818	-		CCNA_03444	0.71	+0.6
3,607,839	-		CCNA_03444	0.72	-1.9
3,607,841	+		CCNA_03444	0.72	-1.9
3,607,848	+		CCNA_03444	0.73	-0.5
3,607,848	+		CCNA_03444	0.73	-1.0
3,607,848	+		CCNA_03444	0.73	-1.3
3,607,874	-		CCNA_03444	0.74	-0.8
3,607,889	+		CCNA_03444	0.74	-0.5
3,607,889	+		CCNA_03444	0.74	-0.8
3,607,889	+		CCNA_03444	0.74	-1.9
3,607,889	+		CCNA_03444	0.74	-2.7
3,607,897	-		CCNA_03444	0.75	+1.6
3,607,907	-		CCNA_03444	0.75	-1.1
3,607,917	-		CCNA_03444	0.75	-1.7
3,607,929	+		CCNA_03444	0.76	-3.0
3,607,936	+		CCNA_03444	0.76	-1.9
3,607,954	-		CCNA_03444	0.77	+0.1
3,608,012	-		CCNA_03444	0.79	-1.9
3,608,020	+		CCNA_03444	0.79	+0.6
3,608,020	+		CCNA_03444	0.79	-1.5
3,608,054	+		CCNA_03444	0.81	-1.8
3,608,062	-		CCNA_03444	0.81	+1.2
3,608,062	-		CCNA_03444	0.81	-4.3
3,608,062	-		CCNA_03444	0.81	-0.8
3,608,063	-		CCNA_03444	0.81	-1.5
3,608,093	+		CCNA_03444	0.82	-2.1
3,608,114	+		CCNA_03444	0.83	-2.2
3,608,122	-		CCNA_03444	0.83	+1.2
3,608,122	-		CCNA_03444	0.83	+0.6
3,608,131	+		CCNA_03444	0.84	-1.5
3,608,177	-		CCNA_03444	0.86	-0.1
3,608,189	-		CCNA_03444	0.86	-1.3
3,608,206	+		CCNA_03444	0.87	-0.8
3,608,207	+		CCNA_03444	0.87	-2.2
3,608,207	-		CCNA_03444	0.87	+1.2
3,608,216	+		CCNA_03444	0.87	-1.2
3,608,242	-		CCNA_03444	0.88	-2.3
3,608,244	-		CCNA_03444	0.88	-0.4
3,608,246	+		CCNA_03444	0.88	-0.5
3,608,246	+		CCNA_03444	0.88	+0.2
3,608,248	+		CCNA_03444	0.89	-1.8
3,608,254	-		CCNA_03444	0.89	+1.2
3,608,254	-		CCNA_03444	0.89	-2.6
3,608,254	-		CCNA_03444	0.89	+0.6
3,608,254	-		CCNA_03444	0.89	-1.1
3,608,259	+		CCNA_03444	0.89	-1.9
3,608,264	+		CCNA_03444	0.89	-0.8
3,608,267	-		CCNA_03444	0.89	+1.2
3,608,281	+		CCNA_03444	0.90	-1.4
3,608,292	+				-2.3
3,608,318	+				-3.1
3,608,318	+				-3.5
3,608,338	+				-1.3
3,608,346	-				-1.3
3,608,360	+				-0.9
3,608,368	-				+0.2
3,608,368	-				-0.9
3,608,404	-				-1.0
3,608,404	-				-0.6
3,608,438	+				-1.7
3,608,441	+				-2.5
3,608,446	-				-2.3
3,608,446	-				+1.2
3,608,446	-				-1.7
3,608,448	+				+0.0
3,608,448	+				-0.4
3,608,448	+				-1.2
3,608,448	+				-1.9
3,608,448	+				-2.3
3,608,448	+				-0.8
3,608,448	+				-1.6
3,608,454	+				-2.0
3,608,456	-				+0.6
3,608,456	-				-0.4
3,608,456	-				+1.6
3,608,456	-				-1.6
3,608,456	-				-0.1
3,608,459	+				-0.5
3,608,464	+				-1.5
3,608,472	-				-1.0
3,608,496	-				-0.6
3,608,519	-				-3.1
3,608,530	+				-0.1
3,608,538	-				+0.2
3,608,538	-				+1.6
3,608,538	-				-2.1
3,608,538	-				-0.6
3,608,625	-				-0.7
3,608,637	-				-1.1
3,608,653	-				+0.1
3,608,747	-				-0.0
3,608,752	+				+0.7
3,608,795	-				+1.0
3,608,839	+				-0.8
3,608,842	-				+0.4
3,608,866	+				-0.2
3,608,868	+				-0.2
3,608,870	+				+0.2
3,608,876	-				-0.6
3,608,924	+				-1.4
3,608,938	+				-0.4
3,608,945	+				+0.4
3,608,946	-				+0.9
3,608,946	-				-0.6
3,608,946	-				+1.0
3,608,973	+		CCNA_03445	0.11	+0.6
3,608,983	+		CCNA_03445	0.11	+1.1
3,608,991	-		CCNA_03445	0.12	+0.6
3,609,015	+		CCNA_03445	0.13	-1.1
3,609,026	+		CCNA_03445	0.13	-0.5
3,609,071	+		CCNA_03445	0.15	-0.0
3,609,079	-		CCNA_03445	0.15	-2.0
3,609,093	+		CCNA_03445	0.16	+0.7
3,609,098	+		CCNA_03445	0.16	+2.2
3,609,101	-		CCNA_03445	0.16	+0.2
3,609,101	-		CCNA_03445	0.16	-0.8
3,609,130	-		CCNA_03445	0.18	-0.2
3,609,141	+		CCNA_03445	0.18	+0.4
3,609,168	-		CCNA_03445	0.19	-1.0
3,609,230	+		CCNA_03445	0.22	+0.7
3,609,230	+		CCNA_03445	0.22	-0.1
3,609,238	-		CCNA_03445	0.22	+1.8
3,609,238	-		CCNA_03445	0.22	+0.5
3,609,240	+		CCNA_03445	0.22	-1.1
3,609,256	-		CCNA_03445	0.23	+0.9
3,609,293	+		CCNA_03445	0.24	-1.0
3,609,305	+		CCNA_03445	0.25	-0.7
3,609,307	-		CCNA_03445	0.25	-0.0
3,609,329	+		CCNA_03445	0.26	-0.3
3,609,329	+		CCNA_03445	0.26	+1.2
3,609,329	+		CCNA_03445	0.26	+0.1
3,609,337	-		CCNA_03445	0.26	-1.8
3,609,338	-		CCNA_03445	0.26	-0.8
3,609,380	+		CCNA_03445	0.28	-0.1
3,609,388	-		CCNA_03445	0.28	+0.1
3,609,388	-				-1.1
3,609,415	-		CCNA_03445	0.29	+0.2
3,609,444	+		CCNA_03445	0.31	+1.4
3,609,452	-		CCNA_03445	0.31	-0.1
3,609,463	+		CCNA_03445	0.31	-0.4
3,609,477	+		CCNA_03445	0.32	-0.1
3,609,478	+		CCNA_03445	0.32	+1.0
3,609,486	-		CCNA_03445	0.32	+0.3
3,609,490	-		CCNA_03445	0.32	-1.7
3,609,512	-		CCNA_03445	0.33	-0.0