Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03414

Experiment: PYE_noCalcium 25C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep3 12 days
3,580,239	-		CCNA_03412	0.59	-4.7
3,580,305	+		CCNA_03412	0.63	-0.4
3,580,339	+		CCNA_03412	0.66	+0.2
3,580,411	+		CCNA_03412	0.71	-2.1
3,580,430	+		CCNA_03412	0.72	-0.6
3,580,438	-		CCNA_03412	0.73	-3.8
3,580,450	-		CCNA_03412	0.74	-3.3
3,580,467	+		CCNA_03412	0.75	-2.3
3,580,475	-		CCNA_03412	0.75	-4.6
3,580,480	+		CCNA_03412	0.76	-3.2
3,580,524	-		CCNA_03412	0.79	-3.9
3,580,527	-		CCNA_03412	0.79	-2.5
3,580,558	+		CCNA_03412	0.81	-2.5
3,580,625	+		CCNA_03412	0.86	-0.4
3,580,626	+		CCNA_03412	0.86	-0.2
3,580,626	+		CCNA_03412	0.86	-4.3
3,580,631	+		CCNA_03412	0.86	-1.6
3,580,633	-		CCNA_03412	0.87	-3.1
3,580,645	-		CCNA_03412	0.87	-3.8
3,580,645	-		CCNA_03412	0.87	-5.5
3,580,682	-				-5.0
3,580,727	-				-2.8
3,580,744	+				-1.4
3,580,749	+				-0.4
3,580,792	+				-0.2
3,580,792	+				+1.2
3,580,794	+				-0.2
3,580,794	+				-2.5
3,580,794	+				+0.8
3,580,794	+				+0.2
3,580,802	-				-2.3
3,580,802	-				-4.9
3,580,802	-				-3.1
3,580,802	-				-2.2
3,580,802	-				-3.2
3,580,802	-				-3.4
3,580,802	-				-4.5
3,580,833	-				-0.3
3,580,840	+				+0.4
3,580,840	+				-1.0
3,580,840	+				-2.0
3,580,840	+				-2.4
3,580,840	+				+0.9
3,580,848	-				-1.6
3,580,863	-				-2.5
3,580,941	-		CCNA_03413	0.26	-2.3
3,580,963	-		CCNA_03413	0.33	-2.8
3,580,963	-		CCNA_03413	0.33	-4.0
3,580,970	-		CCNA_03413	0.35	-3.6
3,580,975	+		CCNA_03413	0.37	-0.4
3,580,993	+		CCNA_03413	0.42	-0.8
3,580,998	+		CCNA_03413	0.43	+1.2
3,580,998	+		CCNA_03413	0.43	+2.2
3,580,998	+				+2.2
3,580,998	+		CCNA_03413	0.43	+0.2
3,580,998	+		CCNA_03413	0.43	-0.2
3,580,998	+		CCNA_03413	0.43	-0.4
3,580,998	+		CCNA_03413	0.43	-0.2
3,581,001	-		CCNA_03413	0.44	-2.9
3,581,006	-		CCNA_03413	0.46	-4.3
3,581,006	-		CCNA_03413	0.46	-2.7
3,581,016	+		CCNA_03413	0.49	-1.6
3,581,063	+		CCNA_03413	0.63	-0.2
3,581,068	+		CCNA_03413	0.64	+1.2
3,581,076	-		CCNA_03413	0.67	-3.9
3,581,077	+		CCNA_03413	0.67	-0.4
3,581,115	-		CCNA_03413	0.78	-1.3
3,581,161	+				-0.8
3,581,164	-				-1.0
3,581,220	+				+0.2
3,581,228	-				-0.2
3,581,228	-				+0.1
3,581,231	+				-1.8
3,581,260	-				-3.5
3,581,263	-				-0.8
3,581,345	-		CCNA_03414	0.12	-3.7
3,581,403	+		CCNA_03414	0.17	-4.7
3,581,434	-		CCNA_03414	0.19	-4.3
3,581,444	+		CCNA_03414	0.20	-0.7
3,581,444	-		CCNA_03414	0.20	-3.4
3,581,500	+		CCNA_03414	0.25	-1.0
3,581,522	-		CCNA_03414	0.27	-1.9
3,581,529	+		CCNA_03414	0.28	-2.6
3,581,529	+		CCNA_03414	0.28	+0.6
3,581,537	-		CCNA_03414	0.28	-1.9
3,581,537	-		CCNA_03414	0.28	-4.3
3,581,547	-		CCNA_03414	0.29	-0.7
3,581,566	+		CCNA_03414	0.31	+0.3
3,581,569	-		CCNA_03414	0.31	-2.6
3,581,604	+		CCNA_03414	0.34	-1.7
3,581,640	-		CCNA_03414	0.37	-2.9
3,581,687	-		CCNA_03414	0.41	-1.9
3,581,730	+		CCNA_03414	0.45	-2.0
3,581,732	-		CCNA_03414	0.45	+3.2
3,581,738	-		CCNA_03414	0.46	-1.2
3,581,770	+		CCNA_03414	0.49	-0.8
3,581,796	+		CCNA_03414	0.51	-0.4
3,581,802	+		CCNA_03414	0.52	-2.3
3,581,810	-		CCNA_03414	0.52	-0.8
3,581,824	+		CCNA_03414	0.53	-0.8
3,581,824	+		CCNA_03414	0.53	-1.5
3,581,826	+		CCNA_03414	0.54	-0.4
3,581,845	-		CCNA_03414	0.55	-3.3
3,581,864	-		CCNA_03414	0.57	-3.3
3,581,899	+		CCNA_03414	0.60	-2.7
3,581,917	-		CCNA_03414	0.62	-3.6
3,581,939	+		CCNA_03414	0.64	-1.9
3,581,942	-		CCNA_03414	0.64	-4.0
3,581,966	-		CCNA_03414	0.66	-3.4
3,581,966	-		CCNA_03414	0.66	-3.8
3,581,966	-		CCNA_03414	0.66	-4.4
3,582,012	+		CCNA_03414	0.70	-2.1
3,582,018	+				-0.2
3,582,020	-		CCNA_03414	0.71	-3.7
3,582,026	-		CCNA_03414	0.71	-0.2
3,582,026	-		CCNA_03414	0.71	-4.5
3,582,026	-		CCNA_03414	0.71	-3.8
3,582,026	-		CCNA_03414	0.71	-3.5
3,582,026	-		CCNA_03414	0.71	-2.8
3,582,026	-		CCNA_03414	0.71	-4.2
3,582,026	-		CCNA_03414	0.71	-2.2
3,582,026	-		CCNA_03414	0.71	-3.1
3,582,042	+		CCNA_03414	0.73	-2.8
3,582,042	+		CCNA_03414	0.73	+1.2
3,582,050	-		CCNA_03414	0.73	-2.9
3,582,065	-		CCNA_03414	0.75	-2.1
3,582,120	-		CCNA_03414	0.79	-1.1
3,582,127	+		CCNA_03414	0.80	-1.3
3,582,167	-		CCNA_03414	0.83	-2.8
3,582,223	-		CCNA_03414	0.88	-3.1
3,582,239	-		CCNA_03414	0.90	-0.2
3,582,245	-				-4.8
3,582,255	-				-3.6
3,582,362	+				+0.7
3,582,362	+				-0.3
3,582,362	+				-2.0
3,582,362	+				-0.0
3,582,362	+				-0.4
3,582,362	+				-1.2
3,582,370	-				-1.0
3,582,370	-				+0.9
3,582,370	-				+0.3
3,582,490	+				-1.3
3,582,560	-		CCNA_03415	0.37	-0.8
3,582,560	-		CCNA_03415	0.37	-1.0
3,582,568	+		CCNA_03415	0.41	-0.9
3,582,581	-		CCNA_03415	0.46	-0.1
3,582,589	-		CCNA_03415	0.50	-0.8
3,582,589	-		CCNA_03415	0.50	+0.3
3,582,652	-		CCNA_03415	0.77	-0.8
3,582,713	-				-0.5
3,582,713	-				+0.5
3,582,754	-				+0.3
3,582,784	+				+2.1
3,582,791	-				-2.3
3,582,807	+				-1.9
3,582,840	+				+2.1
3,582,850	+				-0.9
3,582,855	+				+0.1
3,582,910	+		CCNA_03416	0.14	-0.4
3,582,928	-		CCNA_03416	0.16	-1.7
3,582,936	+		CCNA_03416	0.17	-2.6
3,582,944	-		CCNA_03416	0.18	-2.2
3,582,954	+		CCNA_03416	0.19	-2.2
3,582,962	-		CCNA_03416	0.19	-2.7
3,582,969	-		CCNA_03416	0.20	-2.9
3,583,036	-		CCNA_03416	0.27	-2.3
3,583,058	-		CCNA_03416	0.29	-2.7
3,583,058	-		CCNA_03416	0.29	-2.6
3,583,069	+		CCNA_03416	0.30	-2.2
3,583,096	+		CCNA_03416	0.33	+1.2
3,583,096	+		CCNA_03416	0.33	-2.5
3,583,096	-		CCNA_03416	0.33	-1.2
3,583,102	+		CCNA_03416	0.33	-1.3
3,583,112	-		CCNA_03416	0.34	-3.3
3,583,132	-		CCNA_03416	0.36	-2.2
3,583,148	+		CCNA_03416	0.38	+0.2
3,583,168	-		CCNA_03416	0.40	-1.0
3,583,170	+		CCNA_03416	0.40	-0.8
3,583,201	+		CCNA_03416	0.43	+1.1
3,583,209	-		CCNA_03416	0.44	-1.0
3,583,228	+		CCNA_03416	0.46	-2.4
3,583,236	-		CCNA_03416	0.47	-1.5
3,583,280	+		CCNA_03416	0.51	-2.2
3,583,288	-		CCNA_03416	0.52	-2.4
3,583,295	+		CCNA_03416	0.53	-1.2
3,583,295	+		CCNA_03416	0.53	-1.0
3,583,295	+		CCNA_03416	0.53	-1.7
3,583,295	+		CCNA_03416	0.53	-2.3
3,583,295	+		CCNA_03416	0.53	-0.9
3,583,295	+		CCNA_03416	0.53	+0.4
3,583,295	+		CCNA_03416	0.53	-3.0
3,583,303	-		CCNA_03416	0.53	-1.7
3,583,303	-		CCNA_03416	0.53	-1.7
3,583,303	-		CCNA_03416	0.53	-0.6
3,583,303	-		CCNA_03416	0.53	-2.9
3,583,312	+		CCNA_03416	0.54	-1.2
3,583,329	-		CCNA_03416	0.56	-2.3
3,583,346	-		CCNA_03416	0.58	-2.6
3,583,351	-		CCNA_03416	0.58	-1.8