Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03295

Experiment: PYE_noCalcium 25C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep3 12 days
3,463,577	-		CCNA_03294	0.29	+0.7
3,463,592	-		CCNA_03294	0.30	+1.1
3,463,661	+		CCNA_03294	0.36	+1.0
3,463,668	-		CCNA_03294	0.36	-1.6
3,463,678	-		CCNA_03294	0.37	+0.2
3,463,678	-		CCNA_03294	0.37	-0.4
3,463,678	-		CCNA_03294	0.37	-1.4
3,463,713	-		CCNA_03294	0.40	+0.0
3,463,718	+		CCNA_03294	0.41	-0.4
3,463,776	+		CCNA_03294	0.45	-1.2
3,463,796	+		CCNA_03294	0.47	-0.4
3,463,837	+		CCNA_03294	0.50	-1.3
3,463,837	+		CCNA_03294	0.50	-1.0
3,463,854	-		CCNA_03294	0.52	+0.8
3,463,868	+		CCNA_03294	0.53	-0.9
3,463,868	+		CCNA_03294	0.53	+1.1
3,463,868	+		CCNA_03294	0.53	-0.4
3,463,876	-		CCNA_03294	0.53	-1.8
3,463,882	+		CCNA_03294	0.54	+0.6
3,463,887	+		CCNA_03294	0.54	+0.1
3,463,887	-		CCNA_03294	0.54	-1.0
3,463,895	-		CCNA_03294	0.55	-2.0
3,463,895	-		CCNA_03294	0.55	-0.3
3,463,924	+		CCNA_03294	0.57	+1.1
3,463,927	-		CCNA_03294	0.58	-0.2
3,463,932	-		CCNA_03294	0.58	-2.1
3,463,944	+		CCNA_03294	0.59	+3.1
3,463,952	-		CCNA_03294	0.60	-1.2
3,463,952	-		CCNA_03294	0.60	-0.4
3,463,980	-		CCNA_03294	0.62	-0.0
3,463,997	-		CCNA_03294	0.63	+0.1
3,464,034	-		CCNA_03294	0.66	-1.2
3,464,034	-		CCNA_03294	0.66	-0.7
3,464,036	+		CCNA_03294	0.66	+0.3
3,464,044	+		CCNA_03294	0.67	+0.1
3,464,044	-		CCNA_03294	0.67	-1.2
3,464,044	-		CCNA_03294	0.67	-1.1
3,464,044	-		CCNA_03294	0.67	-0.8
3,464,044	-		CCNA_03294	0.67	+2.1
3,464,044	-		CCNA_03294	0.67	-0.9
3,464,057	+		CCNA_03294	0.68	-0.7
3,464,057	+		CCNA_03294	0.68	-0.7
3,464,057	+		CCNA_03294	0.68	-0.4
3,464,078	+		CCNA_03294	0.70	-0.2
3,464,114	-		CCNA_03294	0.73	-1.0
3,464,116	+		CCNA_03294	0.73	-1.2
3,464,118	-		CCNA_03294	0.73	-0.8
3,464,120	+		CCNA_03294	0.73	-2.4
3,464,120	+		CCNA_03294	0.73	-0.9
3,464,159	+		CCNA_03294	0.76	-0.8
3,464,162	-		CCNA_03294	0.77	-0.9
3,464,162	-		CCNA_03294	0.77	-1.4
3,464,188	+		CCNA_03294	0.79	+0.1
3,464,188	+		CCNA_03294	0.79	-2.7
3,464,196	-		CCNA_03294	0.79	-1.1
3,464,196	-		CCNA_03294	0.79	-1.0
3,464,224	+		CCNA_03294	0.82	-0.4
3,464,225	-		CCNA_03294	0.82	-1.1
3,464,232	-		CCNA_03294	0.82	-0.2
3,464,252	+		CCNA_03294	0.84	+0.8
3,464,260	+		CCNA_03294	0.85	+0.6
3,464,290	+		CCNA_03294	0.87	+0.1
3,464,290	+		CCNA_03294	0.87	-0.7
3,464,293	-		CCNA_03294	0.87	-1.6
3,464,300	+		CCNA_03294	0.88	-1.2
3,464,300	+		CCNA_03294	0.88	+0.6
3,464,300	+		CCNA_03294	0.88	-0.2
3,464,303	-		CCNA_03294	0.88	-1.4
3,464,303	-		CCNA_03294	0.88	-1.0
3,464,307	+		CCNA_03294	0.89	-0.7
3,464,308	-		CCNA_03294	0.89	-1.4
3,464,308	-		CCNA_03294	0.89	+0.6
3,464,308	-		CCNA_03294	0.89	-0.8
3,464,378	-				-0.3
3,464,403	+				+2.1
3,464,423	+				+1.1
3,464,431	-				+0.2
3,464,452	-				+0.0
3,464,457	-				-0.3
3,464,482	+				-1.6
3,464,487	+				-1.0
3,464,495	-				-0.2
3,464,495	-				+0.3
3,464,495	-				-0.7
3,464,623	+				+1.1
3,464,645	+				-1.2
3,464,691	-				-0.7
3,464,691	-				-1.0
3,464,718	-				+0.9
3,464,769	+		CCNA_03295	0.10	-1.2
3,464,790	-		CCNA_03295	0.11	-1.0
3,464,819	+		CCNA_03295	0.13	-0.3
3,464,819	-		CCNA_03295	0.13	+0.3
3,464,936	-		CCNA_03295	0.19	-1.0
3,464,940	-		CCNA_03295	0.19	-0.2
3,464,969	-		CCNA_03295	0.21	-1.6
3,465,015	-		CCNA_03295	0.23	-0.1
3,465,060	-		CCNA_03295	0.25	-1.3
3,465,062	+		CCNA_03295	0.25	-1.4
3,465,077	-		CCNA_03295	0.26	-0.4
3,465,096	+		CCNA_03295	0.27	+1.9
3,465,096	+		CCNA_03295	0.27	+1.0
3,465,096	+		CCNA_03295	0.27	-1.1
3,465,104	-		CCNA_03295	0.28	-1.3
3,465,104	-		CCNA_03295	0.28	-0.2
3,465,133	+		CCNA_03295	0.29	-0.5
3,465,146	-		CCNA_03295	0.30	+0.6
3,465,153	-		CCNA_03295	0.30	-0.4
3,465,183	-		CCNA_03295	0.32	-1.4
3,465,196	-		CCNA_03295	0.32	-0.7
3,465,207	+		CCNA_03295	0.33	-0.4
3,465,207	+		CCNA_03295	0.33	-1.4
3,465,211	-		CCNA_03295	0.33	-1.3
3,465,212	+		CCNA_03295	0.33	-0.2
3,465,212	+		CCNA_03295	0.33	-0.3
3,465,241	+		CCNA_03295	0.35	+0.6
3,465,252	+		CCNA_03295	0.35	-0.2
3,465,255	-		CCNA_03295	0.35	-0.9
3,465,280	+		CCNA_03295	0.37	+0.1
3,465,280	-		CCNA_03295	0.37	-0.0
3,465,287	+		CCNA_03295	0.37	-0.9
3,465,287	+		CCNA_03295	0.37	-0.2
3,465,287	+		CCNA_03295	0.37	+0.1
3,465,295	-		CCNA_03295	0.37	+0.0
3,465,325	-		CCNA_03295	0.39	-2.3
3,465,325	-		CCNA_03295	0.39	+1.3
3,465,325	-		CCNA_03295	0.39	+0.6
3,465,341	+		CCNA_03295	0.40	-0.1
3,465,354	-		CCNA_03295	0.41	-2.9
3,465,369	+		CCNA_03295	0.41	-1.7
3,465,389	-		CCNA_03295	0.42	+0.1
3,465,398	+		CCNA_03295	0.43	-0.9
3,465,409	+		CCNA_03295	0.43	+0.0
3,465,409	+		CCNA_03295	0.43	-1.4
3,465,409	+		CCNA_03295	0.43	-0.4
3,465,417	-		CCNA_03295	0.44	+0.6
3,465,417	-		CCNA_03295	0.44	-1.4
3,465,441	+		CCNA_03295	0.45	-0.6
3,465,441	+		CCNA_03295	0.45	+0.1
3,465,449	-		CCNA_03295	0.45	-0.4
3,465,456	+		CCNA_03295	0.46	-1.9
3,465,464	-		CCNA_03295	0.46	+0.6
3,465,485	+		CCNA_03295	0.47	-0.5
3,465,495	+		CCNA_03295	0.48	+1.6
3,465,497	+		CCNA_03295	0.48	-0.3
3,465,503	-		CCNA_03295	0.48	-1.9
3,465,528	-		CCNA_03295	0.50	+0.0
3,465,563	+		CCNA_03295	0.51	+0.1
3,465,565	+		CCNA_03295	0.51	-1.4
3,465,585	+		CCNA_03295	0.53	-0.5
3,465,585	+		CCNA_03295	0.53	-2.0
3,465,593	-		CCNA_03295	0.53	-0.9
3,465,596	-		CCNA_03295	0.53	-0.6
3,465,603	+		CCNA_03295	0.53	-0.0
3,465,603	+		CCNA_03295	0.53	-0.3
3,465,611	-		CCNA_03295	0.54	-1.0
3,465,611	-		CCNA_03295	0.54	-0.9
3,465,611	-		CCNA_03295	0.54	+0.3
3,465,636	+		CCNA_03295	0.55	-0.1
3,465,636	+		CCNA_03295	0.55	+0.6
3,465,644	-		CCNA_03295	0.56	+0.6
3,465,644	-		CCNA_03295	0.56	-1.9
3,465,644	-		CCNA_03295	0.56	+0.2
3,465,644	-		CCNA_03295	0.56	-0.7
3,465,650	+		CCNA_03295	0.56	-0.4
3,465,658	-		CCNA_03295	0.56	-1.4
3,465,712	-		CCNA_03295	0.59	-1.7
3,465,716	+		CCNA_03295	0.59	-1.0
3,465,726	+		CCNA_03295	0.60	-1.2
3,465,734	-		CCNA_03295	0.60	-1.0
3,465,735	+		CCNA_03295	0.60	+0.3
3,465,748	-		CCNA_03295	0.61	+1.3
3,465,765	+		CCNA_03295	0.62	+1.9
3,465,783	+		CCNA_03295	0.63	-2.6
3,465,785	+		CCNA_03295	0.63	-0.2
3,465,853	+		CCNA_03295	0.66	-0.4
3,465,943	+		CCNA_03295	0.71	-1.8
3,465,943	+		CCNA_03295	0.71	+0.1
3,465,943	+		CCNA_03295	0.71	-0.4
3,465,943	+		CCNA_03295	0.71	+0.5
3,465,949	+		CCNA_03295	0.71	-1.0
3,465,951	-		CCNA_03295	0.71	-0.7
3,465,951	-		CCNA_03295	0.71	-0.8
3,465,951	-		CCNA_03295	0.71	+2.5
3,465,951	-		CCNA_03295	0.71	-0.7
3,465,951	-		CCNA_03295	0.71	-1.7
3,465,951	-		CCNA_03295	0.71	-0.1
3,465,951	-		CCNA_03295	0.71	-0.4
3,465,951	-		CCNA_03295	0.71	-1.6
3,465,951	-		CCNA_03295	0.71	-1.3
3,465,951	-		CCNA_03295	0.71	-0.2
3,465,952	-		CCNA_03295	0.72	+0.6
3,466,014	+		CCNA_03295	0.75	-1.1
3,466,020	+		CCNA_03295	0.75	+0.1
3,466,022	-		CCNA_03295	0.75	-0.4
3,466,041	+		CCNA_03295	0.76	-0.6
3,466,041	+		CCNA_03295	0.76	-0.7
3,466,048	+		CCNA_03295	0.77	-0.6
3,466,048	+		CCNA_03295	0.77	-1.2
3,466,048	+		CCNA_03295	0.77	-1.1
3,466,048	+		CCNA_03295	0.77	+0.5
3,466,049	-		CCNA_03295	0.77	-0.9
3,466,053	+		CCNA_03295	0.77	-0.7
3,466,056	-		CCNA_03295	0.77	+1.1
3,466,056	-		CCNA_03295	0.77	+0.4
3,466,061	-		CCNA_03295	0.77	+0.6
3,466,117	-		CCNA_03295	0.80	-1.2
3,466,134	+		CCNA_03295	0.81	-1.3
3,466,168	+		CCNA_03295	0.83	-1.9
3,466,203	+		CCNA_03295	0.85	-1.7
3,466,236	+		CCNA_03295	0.86	-2.4
3,466,238	+		CCNA_03295	0.86	+0.6
3,466,238	+		CCNA_03295	0.86	-0.4
3,466,238	+		CCNA_03295	0.86	-1.7
3,466,246	-		CCNA_03295	0.87	-1.6
3,466,283	+		CCNA_03295	0.89	+0.1
3,466,291	-		CCNA_03295	0.89	+0.6
3,466,297	-		CCNA_03295	0.89	-1.9
3,466,299	-		CCNA_03295	0.90	-0.8
3,466,328	+				-0.4
3,466,360	-				-2.0
3,466,404	-				-0.8
3,466,420	-				+0.6
3,466,431	-				+0.1
3,466,435	+				+1.1
3,466,443	-				-0.1
3,466,446	+				+1.2
3,466,459	+				+0.1
3,466,462	-				-0.4
3,466,467	+				-1.2
3,466,467	-				-0.5
3,466,467	-				-0.9
3,466,495	+				+0.2
3,466,502	-				-1.9
3,466,503	-				-0.2
3,466,587	+				-0.9
3,466,624	+				+0.1
3,466,636	-				+4.5
3,466,706	-				+0.1
3,466,765	+				-1.1
3,466,790	+				-1.7
3,466,790	+				-1.5
3,466,790	+				-2.8
3,466,817	+		CCNA_03296	0.11	-1.6
3,466,824	+		CCNA_03296	0.12	-3.0
3,466,832	+		CCNA_03296	0.13	-1.2
3,466,844	+		CCNA_03296	0.14	-1.1
3,466,895	+		CCNA_03296	0.18	-0.7
3,466,895	+		CCNA_03296	0.18	-2.0
3,466,895	+		CCNA_03296	0.18	-1.9
3,466,895	+		CCNA_03296	0.18	-1.2
3,466,903	-		CCNA_03296	0.18	+1.1
3,466,903	-		CCNA_03296	0.18	-1.2
3,466,903	-		CCNA_03296	0.18	-0.9
3,466,985	+		CCNA_03296	0.25	-2.7
3,466,997	+		CCNA_03296	0.26	-1.9
3,467,005	-		CCNA_03296	0.27	-0.7
3,467,005	-		CCNA_03296	0.27	-2.0
3,467,020	+		CCNA_03296	0.28	-2.5
3,467,028	-		CCNA_03296	0.29	-3.2
3,467,038	-		CCNA_03296	0.29	-0.5
3,467,040	+		CCNA_03296	0.30	-1.2
3,467,048	-		CCNA_03296	0.30	-1.2
3,467,052	+		CCNA_03296	0.31	-2.5
3,467,060	-		CCNA_03296	0.31	+0.6
3,467,131	+		CCNA_03296	0.37	-0.3
3,467,160	-		CCNA_03296	0.39	-2.9
3,467,160	-		CCNA_03296	0.39	-0.4
3,467,171	+		CCNA_03296	0.40	+0.6
3,467,179	-		CCNA_03296	0.41	-1.6
3,467,185	+		CCNA_03296	0.41	-3.5
3,467,185	+		CCNA_03296	0.41	-2.3
3,467,185	-		CCNA_03296	0.41	-1.0
3,467,206	-		CCNA_03296	0.43	+1.0
3,467,243	-		CCNA_03296	0.46	-1.3
3,467,340	+		CCNA_03296	0.54	-2.8
3,467,342	-		CCNA_03296	0.54	-1.0
3,467,347	+		CCNA_03296	0.54	-1.7
3,467,347	+		CCNA_03296	0.54	-1.6
3,467,347	+		CCNA_03296	0.54	-2.4
3,467,347	+		CCNA_03296	0.54	-3.2
3,467,347	+		CCNA_03296	0.54	-2.2
3,467,348	+		CCNA_03296	0.54	-1.3
3,467,348	+		CCNA_03296	0.54	-0.2
3,467,348	+				+1.1
3,467,348	+		CCNA_03296	0.54	-2.2
3,467,348	+		CCNA_03296	0.54	-2.3
3,467,355	-		CCNA_03296	0.55	+0.1
3,467,355	-		CCNA_03296	0.55	-2.0
3,467,355	-		CCNA_03296	0.55	+0.1
3,467,355	-		CCNA_03296	0.55	+0.6
3,467,355	-		CCNA_03296	0.55	-1.0
3,467,356	-		CCNA_03296	0.55	+0.6
3,467,366	-		CCNA_03296	0.56	-0.4
3,467,422	+		CCNA_03296	0.60	-2.1
3,467,422	+		CCNA_03296	0.60	-3.1
3,467,422	+		CCNA_03296	0.60	+1.1
3,467,430	+		CCNA_03296	0.61	-3.3
3,467,430	+		CCNA_03296	0.61	-1.2
3,467,430	+		CCNA_03296	0.61	-2.8
3,467,430	-		CCNA_03296	0.61	+0.6
3,467,430	-		CCNA_03296	0.61	-2.1
3,467,438	-		CCNA_03296	0.62	-1.0
3,467,451	+		CCNA_03296	0.63	-0.4
3,467,451	+		CCNA_03296	0.63	-0.3