Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03233

Experiment: PYE_noCalcium 25C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep3 12 days
3,396,682	+		CCNA_03230	0.68	-1.7
3,396,701	+		CCNA_03230	0.70	-2.1
3,396,785	+		CCNA_03230	0.76	+0.6
3,396,792	+		CCNA_03230	0.76	-0.4
3,396,793	-		CCNA_03230	0.76	-3.2
3,396,802	+		CCNA_03230	0.77	+0.6
3,396,802	+		CCNA_03230	0.77	-1.3
3,396,826	+		CCNA_03230	0.79	-1.7
3,396,834	-		CCNA_03230	0.79	-1.3
3,396,856	-		CCNA_03230	0.81	-1.3
3,396,861	-		CCNA_03230	0.81	-0.6
3,396,904	+		CCNA_03230	0.84	-3.1
3,396,946	+		CCNA_03230	0.87	-1.3
3,396,946	+		CCNA_03230	0.87	-0.6
3,396,965	+		CCNA_03230	0.89	-3.0
3,396,973	-		CCNA_03230	0.89	-2.5
3,397,018	-				-5.0
3,397,020	-				-2.4
3,397,048	-				-3.0
3,397,048	-				-2.0
3,397,054	-				+1.2
3,397,054	-				-3.3
3,397,083	+				-1.3
3,397,094	+				-0.1
3,397,094	+				-1.5
3,397,102	-				-1.0
3,397,108	-				-1.8
3,397,108	-				-2.1
3,397,108	-				-1.1
3,397,123	-				+0.4
3,397,194	+		CCNA_03988	0.14	+3.4
3,397,202	-				+2.6
3,397,202	-				+2.6
3,397,210	+				+1.7
3,397,237	-				-1.8
3,397,257	+				-0.4
3,397,292	-				+0.6
3,397,318	+				+0.8
3,397,320	+				-2.6
3,397,321	+				-0.1
3,397,340	-				-0.8
3,397,349	-				-2.6
3,397,376	+				+0.2
3,397,385	-				-1.0
3,397,520	+		CCNA_03232	0.56	-1.0
3,397,528	+		CCNA_03232	0.59	+0.7
3,397,528	+		CCNA_03232	0.59	-0.8
3,397,536	-		CCNA_03232	0.62	+3.6
3,397,536	-		CCNA_03232	0.62	+0.1
3,397,536	-		CCNA_03232	0.62	-1.3
3,397,546	-		CCNA_03232	0.66	-1.8
3,397,546	-		CCNA_03232	0.66	-2.0
3,397,566	+		CCNA_03232	0.73	-2.0
3,397,574	-		CCNA_03232	0.76	-1.4
3,397,584	-		CCNA_03232	0.79	-3.0
3,397,630	+				+0.5
3,397,633	+				-0.0
3,397,634	+				-0.4
3,397,638	-				-0.8
3,397,643	-				-2.3
3,397,643	-				-0.1
3,397,686	+				+0.3
3,397,710	+				+0.3
3,397,718	-				-1.7
3,397,718	-				-2.7
3,397,758	+				-1.3
3,397,760	+				-0.1
3,397,766	-				-3.2
3,397,766	-				-1.0
3,397,775	-				-1.9
3,397,789	+		CCNA_03233	0.10	+0.2
3,397,798	-		CCNA_03233	0.11	-1.6
3,397,828	+		CCNA_03233	0.13	-0.4
3,397,888	+		CCNA_03233	0.17	-0.4
3,397,898	+		CCNA_03233	0.18	-3.1
3,397,906	-		CCNA_03233	0.19	-1.9
3,397,911	-		CCNA_03233	0.19	-3.2
3,397,949	+		CCNA_03233	0.22	-0.6
3,397,956	+		CCNA_03233	0.22	-0.4
3,397,956	+		CCNA_03233	0.22	-0.5
3,397,956	+		CCNA_03233	0.22	+0.6
3,397,964	-		CCNA_03233	0.23	-2.2
3,397,977	+		CCNA_03233	0.24	-2.4
3,398,028	+		CCNA_03233	0.27	-2.5
3,398,051	+		CCNA_03233	0.29	-0.4
3,398,051	+		CCNA_03233	0.29	+0.9
3,398,051	+		CCNA_03233	0.29	+0.6
3,398,059	-		CCNA_03233	0.30	-1.4
3,398,059	-		CCNA_03233	0.30	+0.6
3,398,059	-		CCNA_03233	0.30	-0.8
3,398,068	+		CCNA_03233	0.30	-2.9
3,398,094	-		CCNA_03233	0.32	-1.7
3,398,188	+		CCNA_03233	0.39	-1.0
3,398,188	+		CCNA_03233	0.39	+0.2
3,398,207	-		CCNA_03233	0.40	-2.0
3,398,262	-		CCNA_03233	0.44	-3.3
3,398,264	+		CCNA_03233	0.44	-0.1
3,398,348	-		CCNA_03233	0.50	-2.2
3,398,524	-		CCNA_03233	0.63	-1.1
3,398,594	+		CCNA_03233	0.68	+0.2
3,398,602	-		CCNA_03233	0.68	-1.8
3,398,602	-		CCNA_03233	0.68	-2.8
3,398,634	-		CCNA_03233	0.71	-3.6
3,398,634	-		CCNA_03233	0.71	-0.9
3,398,699	+		CCNA_03233	0.75	+1.2
3,398,699	+		CCNA_03233	0.75	-0.4
3,398,707	-		CCNA_03233	0.76	-1.0
3,398,734	-		CCNA_03233	0.78	-4.0
3,398,740	+		CCNA_03233	0.78	-3.0
3,398,740	+		CCNA_03233	0.78	+2.2
3,398,749	-		CCNA_03233	0.79	-1.8
3,398,763	+		CCNA_03233	0.80	+2.2
3,398,763	+		CCNA_03233	0.80	-0.8
3,398,783	-		CCNA_03233	0.81	-3.8
3,398,801	-		CCNA_03233	0.82	-3.1
3,398,819	+		CCNA_03233	0.84	-1.3
3,398,822	-		CCNA_03233	0.84	+1.2
3,398,848	-		CCNA_03233	0.86	-1.9
3,398,855	+		CCNA_03233	0.86	+1.2
3,398,855	+		CCNA_03233	0.86	-0.6
3,398,855	+		CCNA_03233	0.86	-1.4
3,398,855	+		CCNA_03233	0.86	+0.2
3,398,855	+		CCNA_03233	0.86	-0.6
3,398,855	+		CCNA_03233	0.86	-0.4
3,398,855	+		CCNA_03233	0.86	-1.6
3,398,855	+		CCNA_03233	0.86	+1.2
3,398,863	-		CCNA_03233	0.87	-3.2
3,398,863	-		CCNA_03233	0.87	-0.3
3,398,863	-		CCNA_03233	0.87	-2.1
3,398,863	-		CCNA_03233	0.87	-2.3
3,398,863	-		CCNA_03233	0.87	-0.4
3,398,924	+				-1.5
3,398,947	+				-0.1
3,398,979	+				-0.6
3,398,984	+				+0.2
3,398,995	+				+0.6
3,399,003	+				-0.8
3,399,054	+				-1.0
3,399,061	+				+1.2
3,399,061	+				+1.2
3,399,069	-				-1.5
3,399,073	+				+0.6
3,399,091	-				+2.5
3,399,145	+		CCNA_03234	0.11	+1.2
3,399,157	+		CCNA_03234	0.12	-0.4
3,399,244	+		CCNA_03234	0.24	+1.6
3,399,244	-		CCNA_03234	0.24	+2.2
3,399,248	+		CCNA_03234	0.25	+1.8
3,399,253	-		CCNA_03234	0.25	+2.2
3,399,266	+		CCNA_03234	0.27	+2.7
3,399,274	-		CCNA_03234	0.28	+2.9
3,399,274	-		CCNA_03234	0.28	+2.7
3,399,276	-		CCNA_03234	0.28	+2.4
3,399,303	-		CCNA_03234	0.32	+1.5
3,399,311	-		CCNA_03234	0.33	+0.7
3,399,316	+		CCNA_03234	0.34	+1.3
3,399,324	-		CCNA_03234	0.35	-0.4
3,399,324	-		CCNA_03234	0.35	-1.1
3,399,324	-		CCNA_03234	0.35	+1.7
3,399,324	-		CCNA_03234	0.35	+0.4
3,399,326	-		CCNA_03234	0.35	-1.0
3,399,382	+		CCNA_03234	0.42	-0.9
3,399,390	-		CCNA_03234	0.43	+5.9
3,399,408	+		CCNA_03234	0.46	+0.2
3,399,416	-		CCNA_03234	0.47	-0.3
3,399,455	+		CCNA_03234	0.52	-1.0
3,399,472	+		CCNA_03234	0.54	+1.4
3,399,499	+		CCNA_03234	0.58	-1.0
3,399,504	+		CCNA_03234	0.59	+0.9
3,399,515	+		CCNA_03234	0.60	-0.4
3,399,515	+		CCNA_03234	0.60	+0.9
3,399,515	+		CCNA_03234	0.60	+0.2
3,399,518	-		CCNA_03234	0.61	+2.6
3,399,523	-		CCNA_03234	0.61	+0.4
3,399,523	-		CCNA_03234	0.61	+3.7
3,399,551	+		CCNA_03234	0.65	+2.3
3,399,614	-		CCNA_03234	0.73	-0.1
3,399,627	+		CCNA_03234	0.75	-0.3
3,399,627	+		CCNA_03234	0.75	-0.1
3,399,635	-		CCNA_03234	0.76	+3.1
3,399,635	-		CCNA_03234	0.76	-0.0
3,399,635	-		CCNA_03234	0.76	+1.1
3,399,674	-		CCNA_03234	0.81	-2.0
3,399,688	+		CCNA_03234	0.83	-1.7
3,399,696	-		CCNA_03234	0.84	-1.0
3,399,723	-		CCNA_03234	0.88	+1.7
3,399,723	-		CCNA_03234	0.88	+4.1
3,399,749	+				+0.2
3,399,749	+				+0.4
3,399,781	-				+0.6
3,399,790	-				-1.1
3,399,808	+				-0.5
3,399,822	-				+2.7
3,399,832	-				+4.6
3,399,832	-				+4.4
3,399,832	-				+3.4
3,399,834	-				-2.7
3,399,857	-				+5.2
3,399,867	+				+4.2
3,399,867	+				+5.2
3,399,877	+				+3.5
3,399,877	+				+4.5
3,399,877	+				+3.4
3,399,884	+				+4.2
3,399,885	-				+4.8
3,399,885	-				+4.9
3,399,885	-				+5.6
3,399,930	-				+4.4
3,399,952	-		CCNA_03235	0.12	+4.7
3,399,993	+		CCNA_03235	0.15	+4.2
3,400,001	-		CCNA_03235	0.16	+4.1
3,400,003	+		CCNA_03235	0.16	+3.9
3,400,021	-		CCNA_03235	0.18	+5.1