Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01193

Experiment: PYE_noCalcium 25C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep3 12 days
1,312,552	+				-1.5
1,312,556	-				-1.8
1,312,605	-				-1.4
1,312,618	-				-0.3
1,312,620	+				-1.0
1,312,676	+		CCNA_01192	0.13	-0.4
1,312,686	+		CCNA_01192	0.14	+0.9
1,312,707	-		CCNA_01192	0.16	+0.8
1,312,709	+		CCNA_01192	0.17	+0.3
1,312,730	+		CCNA_01192	0.19	+0.5
1,312,816	-		CCNA_01192	0.28	-0.0
1,312,842	+		CCNA_01192	0.31	-1.8
1,312,849	-		CCNA_01192	0.32	+1.7
1,312,856	+		CCNA_01192	0.33	-2.9
1,312,864	-		CCNA_01192	0.33	+1.3
1,312,912	+		CCNA_01192	0.39	-0.3
1,312,920	-		CCNA_01192	0.40	+0.2
1,312,952	-		CCNA_01192	0.43	-1.8
1,312,963	+		CCNA_01192	0.44	-1.5
1,312,971	-		CCNA_01192	0.45	-3.0
1,312,971	-		CCNA_01192	0.45	-0.7
1,312,989	+		CCNA_01192	0.47	+0.6
1,312,997	-		CCNA_01192	0.48	+0.8
1,312,997	-		CCNA_01192	0.48	+0.4
1,313,046	+		CCNA_01192	0.53	+0.5
1,313,054	-		CCNA_01192	0.54	+1.1
1,313,054	-		CCNA_01192	0.54	-0.2
1,313,094	+		CCNA_01192	0.58	-1.6
1,313,107	+		CCNA_01192	0.60	+1.9
1,313,108	+		CCNA_01192	0.60	-3.2
1,313,116	-		CCNA_01192	0.61	+0.3
1,313,127	+		CCNA_01192	0.62	-0.1
1,313,147	+		CCNA_01192	0.64	-0.4
1,313,148	+		CCNA_01192	0.64	-1.2
1,313,154	-		CCNA_01192	0.65	-0.3
1,313,157	-		CCNA_01192	0.65	-0.9
1,313,181	-		CCNA_01192	0.68	-0.3
1,313,191	-		CCNA_01192	0.69	+0.3
1,313,216	+		CCNA_01192	0.72	+0.0
1,313,235	+		CCNA_01192	0.74	+0.1
1,313,240	+		CCNA_01192	0.74	+0.3
1,313,247	-		CCNA_01192	0.75	-1.1
1,313,255	+		CCNA_01192	0.76	-0.5
1,313,282	-		CCNA_01192	0.79	-0.3
1,313,308	+		CCNA_01192	0.81	-0.6
1,313,316	-		CCNA_01192	0.82	-1.1
1,313,338	-		CCNA_01192	0.85	-0.0
1,313,417	+				-1.7
1,313,568	-				-1.9
1,313,643	+		CCNA_01193	0.10	-2.7
1,313,643	+		CCNA_01193	0.10	-1.4
1,313,651	-		CCNA_01193	0.10	-0.7
1,313,664	-		CCNA_01193	0.11	+0.2
1,313,672	-		CCNA_01193	0.12	-0.7
1,313,693	+		CCNA_01193	0.13	-0.3
1,313,707	-		CCNA_01193	0.13	-0.7
1,313,723	+		CCNA_01193	0.14	-0.3
1,313,727	-		CCNA_01193	0.15	-0.2
1,313,731	-		CCNA_01193	0.15	-0.7
1,313,784	-		CCNA_01193	0.18	+0.4
1,313,807	-		CCNA_01193	0.19	+0.3
1,313,827	-		CCNA_01193	0.20	-0.2
1,313,860	+		CCNA_01193	0.22	-0.9
1,313,876	-		CCNA_01193	0.23	-0.7
1,313,906	-		CCNA_01193	0.24	+0.6
1,313,932	+		CCNA_01193	0.26	+2.3
1,313,984	-		CCNA_01193	0.29	-1.0
1,313,984	-		CCNA_01193	0.29	+0.9
1,313,984	-		CCNA_01193	0.29	+0.5
1,313,997	-		CCNA_01193	0.29	-0.3
1,314,035	+		CCNA_01193	0.31	-1.0
1,314,050	+		CCNA_01193	0.32	-0.5
1,314,077	-		CCNA_01193	0.34	+0.7
1,314,110	-		CCNA_01193	0.36	-0.7
1,314,122	-		CCNA_01193	0.36	+0.5
1,314,152	-		CCNA_01193	0.38	-1.2
1,314,177	-		CCNA_01193	0.39	-0.5
1,314,201	-		CCNA_01193	0.40	-0.5
1,314,201	-		CCNA_01193	0.40	+0.7
1,314,233	+		CCNA_01193	0.42	-1.2
1,314,254	-		CCNA_01193	0.43	-0.5
1,314,290	-		CCNA_01193	0.45	-0.1
1,314,316	-		CCNA_01193	0.47	-0.6
1,314,390	-		CCNA_01193	0.51	+1.8
1,314,486	+		CCNA_01193	0.56	-0.0
1,314,491	+		CCNA_01193	0.56	-0.9
1,314,564	+		CCNA_01193	0.60	-0.3
1,314,564	+		CCNA_01193	0.60	+1.3
1,314,567	-		CCNA_01193	0.60	-1.8
1,314,572	-		CCNA_01193	0.61	-1.0
1,314,572	-		CCNA_01193	0.61	-0.4
1,314,572	-		CCNA_01193	0.61	-0.4
1,314,572	-		CCNA_01193	0.61	-0.1
1,314,572	-		CCNA_01193	0.61	-1.1
1,314,572	-		CCNA_01193	0.61	-1.7
1,314,584	+		CCNA_01193	0.61	+1.0
1,314,584	+		CCNA_01193	0.61	-0.4
1,314,584	+		CCNA_01193	0.61	+1.3
1,314,592	-		CCNA_01193	0.62	-0.5
1,314,592	-		CCNA_01193	0.62	-1.1
1,314,594	+		CCNA_01193	0.62	-0.7
1,314,602	-		CCNA_01193	0.62	+0.2
1,314,602	-		CCNA_01193	0.62	-0.7
1,314,602	-		CCNA_01193	0.62	-1.5
1,314,603	-		CCNA_01193	0.62	-0.7
1,314,631	+		CCNA_01193	0.64	+0.3
1,314,634	-		CCNA_01193	0.64	-0.8
1,314,634	-		CCNA_01193	0.64	-0.8
1,314,747	+		CCNA_01193	0.70	-0.2
1,314,747	+		CCNA_01193	0.70	-0.9
1,314,755	-		CCNA_01193	0.71	-0.2
1,314,757	+		CCNA_01193	0.71	-1.0
1,314,757	+		CCNA_01193	0.71	+0.3
1,314,765	-		CCNA_01193	0.71	-1.5
1,314,791	+		CCNA_01193	0.73	+0.5
1,314,806	+		CCNA_01193	0.74	-0.0
1,314,809	-		CCNA_01193	0.74	-0.5
1,314,809	-		CCNA_01193	0.74	-0.1
1,314,821	+		CCNA_01193	0.74	-0.4
1,314,848	-		CCNA_01193	0.76	-1.5
1,314,849	-		CCNA_01193	0.76	+1.4
1,314,947	+		CCNA_01193	0.81	-0.2
1,314,965	-		CCNA_01193	0.82	-0.6
1,314,979	-		CCNA_01193	0.83	+0.6
1,314,981	+		CCNA_01193	0.83	-1.4
1,315,035	+		CCNA_01193	0.86	-1.0
1,315,043	-		CCNA_01193	0.87	-0.8
1,315,043	-		CCNA_01193	0.87	+0.2
1,315,043	-		CCNA_01193	0.87	-1.9
1,315,049	+		CCNA_01193	0.87	+0.1
1,315,086	-		CCNA_01193	0.89	-0.2
1,315,124	+				+0.5
1,315,129	+				-0.5
1,315,186	+				-0.3
1,315,186	+				-1.6
1,315,186	+				+0.7
1,315,186	-				-0.5
1,315,194	-				-0.7
1,315,194	-				-0.4
1,315,194	-				+2.0
1,315,194	-				+1.3
1,315,224	-				+0.4
1,315,239	+				-0.2
1,315,307	+				+0.1
1,315,307	+				-1.4
1,315,335	+				+0.7
1,315,343	-				-1.1
1,315,589	-				-0.5
1,315,590	+				-1.3
1,315,597	+				+1.3
1,315,729	+				+0.5
1,315,729	+				+1.5
1,315,729	+				-1.3
1,315,734	+				-1.1
1,315,737	-				-1.4
1,315,737	-				-0.3
1,315,737	-				+1.2
1,315,742	-				-0.8
1,315,758	+		CCNA_01194	0.11	-0.0
1,315,760	+		CCNA_01194	0.11	-0.9
1,315,762	-		CCNA_01194	0.11	-2.5
1,315,786	+		CCNA_01194	0.12	+0.3
1,315,799	-		CCNA_01194	0.12	-1.0
1,315,877	-		CCNA_01194	0.15	-1.3
1,315,885	+		CCNA_01194	0.16	-1.0
1,315,891	-		CCNA_01194	0.16	-1.6
1,315,948	+		CCNA_01194	0.18	-0.2
1,315,955	-		CCNA_01194	0.19	+0.6
1,315,956	-		CCNA_01194	0.19	-0.5
1,315,984	-		CCNA_01194	0.20	-2.6
1,316,011	-		CCNA_01194	0.21	-1.2
1,316,039	+		CCNA_01194	0.22	+0.8
1,316,060	+		CCNA_01194	0.23	-0.0
1,316,071	+		CCNA_01194	0.23	+1.3
1,316,079	-		CCNA_01194	0.24	+0.3
1,316,112	-		CCNA_01194	0.25	-1.8
1,316,114	-		CCNA_01194	0.25	-0.3
1,316,125	+		CCNA_01194	0.25	-1.6
1,316,155	+		CCNA_01194	0.27	+2.3
1,316,184	+		CCNA_01194	0.28	-0.0
1,316,192	-		CCNA_01194	0.28	+0.3
1,316,239	+		CCNA_01194	0.30	+0.7
1,316,239	+		CCNA_01194	0.30	-0.0
1,316,239	+		CCNA_01194	0.30	-0.0
1,316,247	-		CCNA_01194	0.30	-0.7