Experiment: PYE_noCalcium 25C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00917 and CCNA_00918 are separated by 73 nucleotides CCNA_00918 and CCNA_00919 are separated by 37 nucleotides CCNA_00919 and CCNA_00920 overlap by 4 nucleotides
CCNA_00917: CCNA_00917 - antitoxin protein parD-1, at 994,996 to 995,262
_00917
CCNA_00918: CCNA_00918 - peptide release factor-glutamine N5-methyltransferase, at 995,336 to 996,205
_00918
CCNA_00919: CCNA_00919 - hypothetical protein, at 996,243 to 996,467
_00919
CCNA_00920: CCNA_00920 - hypothetical protein, at 996,464 to 997,576
_00920
Position (kb) 996
997 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 995.339 kb on + strand at 995.339 kb on + strand at 996.210 kb on + strand at 996.347 kb on + strand, within CCNA_00919 at 996.413 kb on + strand, within CCNA_00919 at 996.422 kb on + strand, within CCNA_00919 at 996.432 kb on + strand, within CCNA_00919 at 996.697 kb on + strand, within CCNA_00920 at 996.697 kb on + strand, within CCNA_00920 at 996.697 kb on + strand, within CCNA_00920 at 996.760 kb on + strand, within CCNA_00920 at 996.760 kb on + strand, within CCNA_00920 at 996.808 kb on + strand, within CCNA_00920 at 997.013 kb on - strand, within CCNA_00920 at 997.146 kb on + strand, within CCNA_00920 at 997.195 kb on + strand, within CCNA_00920 at 997.211 kb on - strand, within CCNA_00920
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days remove 995,339 + +0.6 995,339 + -0.9 996,210 + -0.6 996,347 + CCNA_00919 0.46 -3.1 996,413 + CCNA_00919 0.76 -2.2 996,422 + CCNA_00919 0.80 -4.3 996,432 + CCNA_00919 0.84 -1.7 996,697 + CCNA_00920 0.21 -2.9 996,697 + CCNA_00920 0.21 -1.5 996,697 + CCNA_00920 0.21 -3.4 996,760 + CCNA_00920 0.27 -3.5 996,760 + CCNA_00920 0.27 -4.8 996,808 + CCNA_00920 0.31 -1.9 997,013 - CCNA_00920 0.49 +2.2 997,146 + CCNA_00920 0.61 -5.3 997,195 + CCNA_00920 0.66 -3.5 997,211 - CCNA_00920 0.67 -3.2
Or see this region's nucleotide sequence