Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00780

Experiment: PYE_noCalcium 25C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00778 and CCNA_00779 are separated by 566 nucleotidesCCNA_00779 and CCNA_00780 are separated by 13 nucleotidesCCNA_00780 and CCNA_00781 are separated by 151 nucleotidesCCNA_00781 and CCNA_R0015 are separated by 109 nucleotidesCCNA_R0015 and CCNA_00782 are separated by 110 nucleotides CCNA_00778: CCNA_00778 - GTP-binding protein TypA/BipA, at 837,946 to 839,778 _00778 CCNA_00779: CCNA_00779 - TonB superfamily protein, at 840,345 to 840,746 _00779 CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686 _00780 CCNA_00781: CCNA_00781 - two-component receiver protein CpdR, at 841,838 to 842,194 _00781 CCNA_R0015: CCNA_R0015 - tRNA-Val, at 842,304 to 842,378 _R0015 CCNA_00782: CCNA_00782 - aminobenzoyl-glutamate transport protein, at 842,489 to 844,108 _00782 Position (kb) 840 841 842Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 839.802 kb on + strandat 839.810 kb on - strandat 839.817 kb on - strandat 839.832 kb on - strandat 839.884 kb on - strandat 840.100 kb on - strandat 840.244 kb on + strandat 840.244 kb on + strandat 840.250 kb on - strandat 840.262 kb on + strandat 840.271 kb on + strandat 840.319 kb on - strandat 840.350 kb on - strandat 840.385 kb on + strandat 840.385 kb on + strandat 840.393 kb on - strand, within CCNA_00779at 840.393 kb on - strand, within CCNA_00779at 840.395 kb on + strand, within CCNA_00779at 840.403 kb on - strand, within CCNA_00779at 840.450 kb on + strand, within CCNA_00779at 840.452 kb on + strand, within CCNA_00779at 840.466 kb on + strand, within CCNA_00779at 840.474 kb on - strand, within CCNA_00779at 840.488 kb on + strand, within CCNA_00779at 840.515 kb on + strand, within CCNA_00779at 840.523 kb on - strand, within CCNA_00779at 840.536 kb on + strand, within CCNA_00779at 840.556 kb on + strand, within CCNA_00779at 840.600 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.609 kb on - strand, within CCNA_00779at 840.609 kb on - strand, within CCNA_00779at 840.609 kb on - strand, within CCNA_00779at 840.616 kb on + strand, within CCNA_00779at 840.621 kb on + strand, within CCNA_00779at 840.621 kb on + strand, within CCNA_00779at 840.621 kb on + strand, within CCNA_00779at 840.629 kb on - strand, within CCNA_00779at 840.629 kb on - strand, within CCNA_00779at 840.637 kb on + strand, within CCNA_00779at 840.657 kb on + strand, within CCNA_00779at 840.670 kb on - strand, within CCNA_00779at 840.761 kb on - strandat 840.763 kb on + strandat 840.771 kb on - strandat 840.772 kb on + strandat 840.777 kb on + strandat 840.780 kb on - strandat 840.782 kb on + strandat 840.782 kb on + strandat 840.782 kb on + strandat 840.785 kb on - strandat 840.826 kb on - strandat 840.836 kb on - strandat 840.863 kb on + strand, within CCNA_00780at 840.863 kb on + strand, within CCNA_00780at 840.863 kb on + strand, within CCNA_00780at 840.869 kb on - strand, within CCNA_00780at 840.871 kb on - strand, within CCNA_00780at 840.871 kb on - strand, within CCNA_00780at 840.871 kb on - strand, within CCNA_00780at 840.874 kb on - strand, within CCNA_00780at 840.899 kb on + strand, within CCNA_00780at 840.907 kb on - strand, within CCNA_00780at 840.907 kb on - strand, within CCNA_00780at 840.907 kb on - strand, within CCNA_00780at 840.928 kb on + strand, within CCNA_00780at 840.930 kb on + strand, within CCNA_00780at 840.936 kb on - strand, within CCNA_00780at 840.936 kb on - strand, within CCNA_00780at 840.938 kb on - strand, within CCNA_00780at 840.945 kb on + strand, within CCNA_00780at 840.949 kb on + strand, within CCNA_00780at 840.957 kb on - strand, within CCNA_00780at 840.975 kb on - strand, within CCNA_00780at 840.979 kb on + strand, within CCNA_00780at 840.982 kb on - strand, within CCNA_00780at 840.995 kb on - strand, within CCNA_00780at 841.006 kb on - strand, within CCNA_00780at 841.006 kb on - strand, within CCNA_00780at 841.006 kb on - strand, within CCNA_00780at 841.056 kb on - strand, within CCNA_00780at 841.060 kb on + strand, within CCNA_00780at 841.097 kb on - strand, within CCNA_00780at 841.105 kb on + strand, within CCNA_00780at 841.139 kb on + strand, within CCNA_00780at 841.224 kb on - strand, within CCNA_00780at 841.254 kb on - strand, within CCNA_00780at 841.258 kb on - strand, within CCNA_00780at 841.261 kb on + strand, within CCNA_00780at 841.283 kb on + strand, within CCNA_00780at 841.283 kb on + strand, within CCNA_00780at 841.318 kb on + strand, within CCNA_00780at 841.318 kb on + strand, within CCNA_00780at 841.323 kb on + strand, within CCNA_00780at 841.326 kb on - strand, within CCNA_00780at 841.351 kb on - strand, within CCNA_00780at 841.351 kb on - strand, within CCNA_00780at 841.367 kb on + strand, within CCNA_00780at 841.368 kb on - strand, within CCNA_00780at 841.381 kb on + strand, within CCNA_00780at 841.381 kb on + strand, within CCNA_00780at 841.381 kb on + strand, within CCNA_00780at 841.382 kb on - strand, within CCNA_00780at 841.389 kb on - strand, within CCNA_00780at 841.389 kb on - strand, within CCNA_00780at 841.419 kb on + strand, within CCNA_00780at 841.419 kb on - strand, within CCNA_00780at 841.436 kb on - strand, within CCNA_00780at 841.480 kb on - strand, within CCNA_00780at 841.514 kb on + strand, within CCNA_00780at 841.529 kb on + strand, within CCNA_00780at 841.529 kb on + strand, within CCNA_00780at 841.561 kb on + strand, within CCNA_00780at 841.569 kb on - strand, within CCNA_00780at 841.588 kb on + strand, within CCNA_00780at 841.588 kb on + strand, within CCNA_00780at 841.588 kb on + strand, within CCNA_00780at 841.596 kb on - strandat 841.596 kb on - strandat 841.596 kb on - strandat 841.596 kb on - strandat 841.600 kb on + strandat 841.601 kb on - strandat 841.623 kb on + strandat 841.640 kb on + strandat 841.654 kb on - strandat 841.665 kb on + strandat 841.759 kb on + strandat 841.789 kb on + strandat 841.796 kb on + strandat 841.919 kb on + strand, within CCNA_00781at 841.919 kb on + strand, within CCNA_00781at 841.919 kb on + strand, within CCNA_00781at 841.919 kb on + strand, within CCNA_00781at 841.919 kb on + strand, within CCNA_00781at 841.924 kb on + strand, within CCNA_00781at 841.927 kb on - strand, within CCNA_00781at 841.927 kb on - strand, within CCNA_00781at 841.927 kb on - strand, within CCNA_00781at 841.963 kb on - strand, within CCNA_00781at 842.013 kb on + strand, within CCNA_00781at 842.021 kb on - strand, within CCNA_00781at 842.021 kb on - strand, within CCNA_00781at 842.046 kb on + strand, within CCNA_00781at 842.073 kb on - strand, within CCNA_00781at 842.078 kb on - strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.099 kb on + strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.107 kb on - strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.134 kb on + strand, within CCNA_00781at 842.137 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strandat 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.142 kb on - strand, within CCNA_00781at 842.150 kb on - strand, within CCNA_00781at 842.179 kb on + strandat 842.187 kb on - strandat 842.476 kb on - strandat 842.484 kb on - strandat 842.522 kb on - strandat 842.549 kb on + strandat 842.559 kb on + strandat 842.559 kb on + strandat 842.567 kb on - strandat 842.567 kb on - strandat 842.567 kb on - strandat 842.597 kb on + strandat 842.597 kb on + strandat 842.597 kb on + strandat 842.602 kb on + strandat 842.604 kb on + strandat 842.604 kb on + strandat 842.605 kb on - strandat 842.605 kb on - strandat 842.612 kb on - strandat 842.612 kb on - strandat 842.612 kb on - strandat 842.612 kb on - strandat 842.612 kb on - strandat 842.616 kb on + strandat 842.617 kb on - strandat 842.622 kb on - strandat 842.651 kb on - strand, within CCNA_00782at 842.663 kb on + strand, within CCNA_00782at 842.664 kb on + strand, within CCNA_00782at 842.672 kb on - strand, within CCNA_00782

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days
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839,802 + -0.9
839,810 - +0.4
839,817 - -0.7
839,832 - -1.5
839,884 - +0.1
840,100 - -3.4
840,244 + -1.1
840,244 + -0.4
840,250 - -0.2
840,262 + -1.5
840,271 + -2.2
840,319 - -0.2
840,350 - -0.6
840,385 + -0.8
840,385 + -0.1
840,393 - CCNA_00779 0.12 -1.1
840,393 - CCNA_00779 0.12 -0.5
840,395 + CCNA_00779 0.12 +0.4
840,403 - CCNA_00779 0.14 -2.1
840,450 + CCNA_00779 0.26 -0.1
840,452 + CCNA_00779 0.27 -0.4
840,466 + CCNA_00779 0.30 -1.6
840,474 - CCNA_00779 0.32 -2.7
840,488 + CCNA_00779 0.36 -1.1
840,515 + CCNA_00779 0.42 -0.4
840,523 - CCNA_00779 0.44 +1.5
840,536 + CCNA_00779 0.48 -0.6
840,556 + CCNA_00779 0.52 -0.8
840,600 + CCNA_00779 0.63 -2.0
840,601 + CCNA_00779 0.64 -1.4
840,601 + CCNA_00779 0.64 -0.6
840,601 + CCNA_00779 0.64 -0.8
840,601 + CCNA_00779 0.64 -0.1
840,609 - CCNA_00779 0.66 -2.3
840,609 - CCNA_00779 0.66 -2.2
840,609 - CCNA_00779 0.66 +1.3
840,616 + CCNA_00779 0.67 -0.2
840,621 + CCNA_00779 0.69 -0.1
840,621 + CCNA_00779 0.69 -1.0
840,621 + CCNA_00779 0.69 -1.3
840,629 - CCNA_00779 0.71 +0.5
840,629 - CCNA_00779 0.71 +0.2
840,637 + CCNA_00779 0.73 -1.3
840,657 + CCNA_00779 0.78 +0.5
840,670 - CCNA_00779 0.81 -0.4
840,761 - -0.1
840,763 + -3.4
840,771 - -3.3
840,772 + -2.8
840,777 + -1.5
840,780 - -3.1
840,782 + -3.2
840,782 + -1.3
840,782 + -0.8
840,785 - -0.4
840,826 - -3.5
840,836 - -3.4
840,863 + CCNA_00780 0.11 -3.2
840,863 + CCNA_00780 0.11 -3.6
840,863 + CCNA_00780 0.11 -3.8
840,869 - CCNA_00780 0.12 -3.3
840,871 - CCNA_00780 0.12 -3.3
840,871 - CCNA_00780 0.12 -3.1
840,871 - CCNA_00780 0.12 -2.5
840,874 - CCNA_00780 0.12 -2.9
840,899 + CCNA_00780 0.15 -2.7
840,907 - CCNA_00780 0.16 -2.2
840,907 - CCNA_00780 0.16 -2.7
840,907 - CCNA_00780 0.16 -3.9
840,928 + CCNA_00780 0.18 -0.6
840,930 + CCNA_00780 0.18 -1.9
840,936 - CCNA_00780 0.19 -3.1
840,936 - CCNA_00780 0.19 -4.1
840,938 - CCNA_00780 0.19 -2.5
840,945 + CCNA_00780 0.20 -2.2
840,949 + CCNA_00780 0.20 -4.9
840,957 - CCNA_00780 0.21 -3.7
840,975 - CCNA_00780 0.23 -5.0
840,979 + CCNA_00780 0.24 -2.8
840,982 - CCNA_00780 0.24 -1.9
840,995 - CCNA_00780 0.25 -3.9
841,006 - CCNA_00780 0.27 -1.5
841,006 - CCNA_00780 0.27 -1.9
841,006 - CCNA_00780 0.27 -0.4
841,056 - CCNA_00780 0.32 -1.7
841,060 + CCNA_00780 0.32 -0.6
841,097 - CCNA_00780 0.36 -3.7
841,105 + CCNA_00780 0.37 -2.2
841,139 + CCNA_00780 0.41 -2.0
841,224 - CCNA_00780 0.50 -5.0
841,254 - CCNA_00780 0.53 -2.8
841,258 - CCNA_00780 0.54 -2.7
841,261 + CCNA_00780 0.54 -2.6
841,283 + CCNA_00780 0.56 -0.4
841,283 + CCNA_00780 0.56 -0.6
841,318 + CCNA_00780 0.60 -0.8
841,318 + CCNA_00780 0.60 -2.1
841,323 + CCNA_00780 0.61 -0.4
841,326 - CCNA_00780 0.61 -3.1
841,351 - CCNA_00780 0.64 -1.8
841,351 - CCNA_00780 0.64 -2.6
841,367 + CCNA_00780 0.65 -2.6
841,368 - CCNA_00780 0.66 -5.0
841,381 + CCNA_00780 0.67 -1.4
841,381 + CCNA_00780 0.67 -2.6
841,381 + CCNA_00780 0.67 -3.6
841,382 - CCNA_00780 0.67 -3.3
841,389 - CCNA_00780 0.68 -3.6
841,389 - CCNA_00780 0.68 -4.4
841,419 + CCNA_00780 0.71 -3.3
841,419 - CCNA_00780 0.71 -1.6
841,436 - CCNA_00780 0.73 -5.2
841,480 - CCNA_00780 0.78 -4.1
841,514 + CCNA_00780 0.81 -4.6
841,529 + CCNA_00780 0.83 -3.1
841,529 + CCNA_00780 0.83 -0.4
841,561 + CCNA_00780 0.86 +0.2
841,569 - CCNA_00780 0.87 -3.9
841,588 + CCNA_00780 0.89 -1.7
841,588 + CCNA_00780 0.89 -2.7
841,588 + CCNA_00780 0.89 -3.1
841,596 - -3.4
841,596 - -4.8
841,596 - -3.8
841,596 - -4.9
841,600 + -2.3
841,601 - -4.2
841,623 + -2.0
841,640 + -0.8
841,654 - +0.8
841,665 + -0.9
841,759 + -0.3
841,789 + -0.4
841,796 + -3.0
841,919 + CCNA_00781 0.23 +0.2
841,919 + CCNA_00781 0.23 +0.1
841,919 + CCNA_00781 0.23 -0.9
841,919 + CCNA_00781 0.23 +0.5
841,919 + CCNA_00781 0.23 +0.3
841,924 + CCNA_00781 0.24 +0.1
841,927 - CCNA_00781 0.25 -1.9
841,927 - CCNA_00781 0.25 -0.8
841,927 - CCNA_00781 0.25 -1.2
841,963 - CCNA_00781 0.35 -1.5
842,013 + CCNA_00781 0.49 +0.3
842,021 - CCNA_00781 0.51 -1.3
842,021 - CCNA_00781 0.51 -0.3
842,046 + CCNA_00781 0.58 -0.3
842,073 - CCNA_00781 0.66 -0.0
842,078 - CCNA_00781 0.67 -1.2
842,099 + CCNA_00781 0.73 -0.7
842,099 + CCNA_00781 0.73 -0.2
842,099 + CCNA_00781 0.73 -0.0
842,099 + CCNA_00781 0.73 +0.0
842,099 + CCNA_00781 0.73 +0.6
842,099 + CCNA_00781 0.73 -1.1
842,099 + CCNA_00781 0.73 -0.7
842,099 + CCNA_00781 0.73 +0.8
842,099 + CCNA_00781 0.73 +0.1
842,099 + CCNA_00781 0.73 +0.5
842,099 + CCNA_00781 0.73 -0.0
842,099 + CCNA_00781 0.73 +0.4
842,099 + CCNA_00781 0.73 +0.1
842,107 - CCNA_00781 0.75 -1.8
842,107 - CCNA_00781 0.75 -0.3
842,107 - CCNA_00781 0.75 -2.4
842,107 - CCNA_00781 0.75 -1.0
842,107 - CCNA_00781 0.75 -2.9
842,107 - CCNA_00781 0.75 -1.2
842,107 - CCNA_00781 0.75 -0.6
842,107 - CCNA_00781 0.75 -1.1
842,107 - CCNA_00781 0.75 -0.9
842,107 - CCNA_00781 0.75 -1.7
842,134 + CCNA_00781 0.83 +0.7
842,134 + CCNA_00781 0.83 +0.0
842,134 + CCNA_00781 0.83 +0.2
842,134 + CCNA_00781 0.83 +0.2
842,134 + CCNA_00781 0.83 -0.0
842,134 + CCNA_00781 0.83 +0.2
842,134 + CCNA_00781 0.83 +0.0
842,134 + CCNA_00781 0.83 +0.3
842,134 + CCNA_00781 0.83 +0.1
842,134 + CCNA_00781 0.83 +0.1
842,134 + CCNA_00781 0.83 -0.2
842,134 + CCNA_00781 0.83 +0.3
842,134 + CCNA_00781 0.83 -1.1
842,134 + CCNA_00781 0.83 +0.5
842,134 + CCNA_00781 0.83 -0.1
842,134 + CCNA_00781 0.83 -0.2
842,134 + CCNA_00781 0.83 +0.2
842,134 + CCNA_00781 0.83 +1.0
842,134 + CCNA_00781 0.83 -0.6
842,134 + CCNA_00781 0.83 +0.2
842,137 - CCNA_00781 0.84 -2.2
842,142 - CCNA_00781 0.85 -0.8
842,142 - CCNA_00781 0.85 +1.7
842,142 - CCNA_00781 0.85 -3.1
842,142 - CCNA_00781 0.85 -1.7
842,142 - CCNA_00781 0.85 -3.2
842,142 - +2.2
842,142 - CCNA_00781 0.85 -2.3
842,142 - CCNA_00781 0.85 -0.3
842,142 - CCNA_00781 0.85 -0.5
842,142 - CCNA_00781 0.85 +0.8
842,142 - CCNA_00781 0.85 +0.3
842,150 - CCNA_00781 0.87 -2.0
842,179 + +0.3
842,187 - +1.0
842,476 - +0.5
842,484 - +0.6
842,522 - +0.5
842,549 + +1.4
842,559 + -0.3
842,559 + -0.6
842,567 - -0.5
842,567 - +0.5
842,567 - +0.8
842,597 + +0.5
842,597 + -0.2
842,597 + -0.7
842,602 + -0.7
842,604 + +0.7
842,604 + -2.1
842,605 - +0.9
842,605 - +0.6
842,612 - +0.7
842,612 - +0.7
842,612 - +0.2
842,612 - +1.2
842,612 - +0.2
842,616 + -0.1
842,617 - +0.3
842,622 - +0.7
842,651 - CCNA_00782 0.10 +1.5
842,663 + CCNA_00782 0.11 -0.3
842,664 + CCNA_00782 0.11 -0.4
842,672 - CCNA_00782 0.11 +1.0

Or see this region's nucleotide sequence