Experiment: PYE_noCalcium 25C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00740 and CCNA_00741 overlap by 1 nucleotides CCNA_00741 and CCNA_00742 are separated by 57 nucleotides CCNA_00742 and CCNA_00743 are separated by 146 nucleotides CCNA_00743 and CCNA_00744 are separated by 241 nucleotides
CCNA_00740: CCNA_00740 - riboflavin kinase/FMN adenylyltransferase, at 798,513 to 799,454
_00740
CCNA_00741: CCNA_00741 - 3-hydroxybutyryl-CoA dehydratase, at 799,454 to 799,879
_00741
CCNA_00742: CCNA_00742 - HAD superfamily sugar phosphatase, at 799,937 to 800,797
_00742
CCNA_00743: CCNA_00743 - NnrU family membrane protein, at 800,944 to 801,510
_00743
CCNA_00744: CCNA_00744 - GIY-YIG endonuclease domain protein, at 801,752 to 802,036
_00744
Position (kb) 799
800
801 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.481 kb on - strand at 799.516 kb on - strand, within CCNA_00741 at 799.517 kb on - strand, within CCNA_00741 at 799.543 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.607 kb on - strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.630 kb on + strand, within CCNA_00741 at 799.632 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.638 kb on - strand, within CCNA_00741 at 799.660 kb on + strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.689 kb on - strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.725 kb on + strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.730 kb on + strand, within CCNA_00741 at 799.753 kb on - strand, within CCNA_00741 at 799.772 kb on - strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.808 kb on - strand, within CCNA_00741 at 799.863 kb on + strand at 799.881 kb on - strand at 799.885 kb on + strand at 799.909 kb on + strand at 799.912 kb on - strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.917 kb on - strand at 799.917 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.946 kb on - strand at 799.979 kb on - strand at 799.985 kb on + strand at 799.985 kb on - strand at 799.993 kb on - strand at 800.054 kb on + strand, within CCNA_00742 at 800.097 kb on + strand, within CCNA_00742 at 800.193 kb on + strand, within CCNA_00742 at 800.198 kb on + strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.261 kb on - strand, within CCNA_00742 at 800.302 kb on - strand, within CCNA_00742 at 800.317 kb on - strand, within CCNA_00742 at 800.330 kb on - strand, within CCNA_00742 at 800.332 kb on - strand, within CCNA_00742 at 800.352 kb on + strand, within CCNA_00742 at 800.360 kb on - strand, within CCNA_00742 at 800.394 kb on + strand, within CCNA_00742 at 800.402 kb on - strand, within CCNA_00742 at 800.417 kb on - strand, within CCNA_00742 at 800.425 kb on - strand, within CCNA_00742 at 800.438 kb on - strand, within CCNA_00742 at 800.460 kb on - strand, within CCNA_00742 at 800.471 kb on - strand, within CCNA_00742 at 800.473 kb on - strand, within CCNA_00742 at 800.502 kb on + strand, within CCNA_00742 at 800.514 kb on + strand, within CCNA_00742 at 800.520 kb on + strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.568 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.629 kb on + strand, within CCNA_00742 at 800.655 kb on + strand, within CCNA_00742 at 800.660 kb on + strand, within CCNA_00742 at 800.663 kb on - strand, within CCNA_00742 at 800.668 kb on - strand, within CCNA_00742 at 800.693 kb on - strand, within CCNA_00742 at 800.702 kb on + strand, within CCNA_00742 at 800.735 kb on - strand at 800.743 kb on + strand at 800.855 kb on + strand at 800.855 kb on + strand at 800.858 kb on - strand at 800.863 kb on - strand at 800.863 kb on - strand at 800.963 kb on + strand at 800.973 kb on + strand at 800.973 kb on + strand at 800.981 kb on - strand at 800.981 kb on - strand at 800.981 kb on - strand at 800.990 kb on - strand at 800.992 kb on + strand at 801.039 kb on + strand, within CCNA_00743 at 801.039 kb on + strand, within CCNA_00743 at 801.091 kb on - strand, within CCNA_00743 at 801.130 kb on + strand, within CCNA_00743 at 801.135 kb on + strand, within CCNA_00743 at 801.135 kb on + strand, within CCNA_00743 at 801.177 kb on - strand, within CCNA_00743 at 801.185 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.207 kb on - strand, within CCNA_00743 at 801.207 kb on - strand, within CCNA_00743 at 801.222 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.244 kb on - strand, within CCNA_00743 at 801.266 kb on + strand, within CCNA_00743 at 801.274 kb on - strand, within CCNA_00743 at 801.291 kb on + strand, within CCNA_00743 at 801.305 kb on - strand, within CCNA_00743 at 801.320 kb on - strand, within CCNA_00743 at 801.322 kb on - strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.342 kb on + strand, within CCNA_00743 at 801.342 kb on + strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.392 kb on + strand, within CCNA_00743 at 801.401 kb on + strand, within CCNA_00743 at 801.402 kb on + strand, within CCNA_00743 at 801.402 kb on + strand, within CCNA_00743 at 801.410 kb on - strand, within CCNA_00743 at 801.418 kb on + strand, within CCNA_00743 at 801.418 kb on + strand, within CCNA_00743 at 801.418 kb on + strand, within CCNA_00743 at 801.435 kb on + strand, within CCNA_00743 at 801.438 kb on - strand, within CCNA_00743 at 801.443 kb on - strand, within CCNA_00743 at 801.469 kb on + strand at 801.483 kb on + strand at 801.506 kb on + strand at 801.556 kb on + strand at 801.564 kb on + strand at 801.564 kb on + strand at 801.572 kb on - strand at 801.572 kb on - strand at 801.596 kb on + strand at 801.596 kb on + strand at 801.596 kb on + strand at 801.604 kb on - strand at 801.604 kb on - strand at 801.604 kb on - strand at 801.623 kb on - strand at 801.628 kb on - strand at 801.628 kb on - strand at 801.628 kb on - strand at 801.643 kb on + strand at 801.666 kb on + strand at 801.669 kb on - strand at 801.674 kb on - strand at 801.764 kb on + strand at 801.764 kb on + strand at 801.777 kb on - strand at 801.797 kb on + strand, within CCNA_00744
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days remove 799,441 + +1.2 799,441 + -0.9 799,441 + -0.8 799,441 + +0.7 799,449 - -0.5 799,449 - -0.4 799,481 - -1.5 799,516 - CCNA_00741 0.15 -0.6 799,517 - CCNA_00741 0.15 -0.7 799,543 - CCNA_00741 0.21 +0.2 799,552 - CCNA_00741 0.23 -0.8 799,552 - CCNA_00741 0.23 +2.2 799,607 - CCNA_00741 0.36 +0.5 799,626 + CCNA_00741 0.40 -2.1 799,626 + CCNA_00741 0.40 -0.2 799,626 + CCNA_00741 0.40 -0.3 799,626 + CCNA_00741 0.40 -0.6 799,626 + CCNA_00741 0.40 +1.2 799,630 + CCNA_00741 0.41 -0.6 799,632 - CCNA_00741 0.42 -0.7 799,634 - CCNA_00741 0.42 -1.2 799,634 - CCNA_00741 0.42 -0.6 799,634 - CCNA_00741 0.42 -0.3 799,634 - CCNA_00741 0.42 -0.1 799,638 - CCNA_00741 0.43 -2.0 799,660 + CCNA_00741 0.48 -1.1 799,670 - CCNA_00741 0.51 -1.4 799,670 - CCNA_00741 0.51 -1.1 799,670 - CCNA_00741 0.51 +0.4 799,689 - CCNA_00741 0.55 -3.1 799,720 + CCNA_00741 0.62 -0.3 799,720 + CCNA_00741 0.62 +1.2 799,725 + CCNA_00741 0.64 -1.3 799,728 - CCNA_00741 0.64 -1.9 799,728 - CCNA_00741 0.64 -0.4 799,730 + CCNA_00741 0.65 -0.6 799,753 - CCNA_00741 0.70 -0.7 799,772 - CCNA_00741 0.75 -0.7 799,783 + CCNA_00741 0.77 -0.3 799,783 + CCNA_00741 0.77 -2.1 799,808 - CCNA_00741 0.83 -0.7 799,863 + -0.8 799,881 - +1.1 799,885 + -0.1 799,909 + -0.9 799,912 - +0.2 799,914 + +0.8 799,914 + -1.4 799,914 + -0.1 799,914 + -1.5 799,914 + -1.8 799,917 - -0.9 799,917 - -0.8 799,922 - -0.2 799,922 - +0.5 799,922 - -0.1 799,922 - -0.6 799,946 - -0.5 799,979 - -2.4 799,985 + +2.2 799,985 - -2.1 799,993 - -1.1 800,054 + CCNA_00742 0.14 -0.1 800,097 + CCNA_00742 0.19 +1.2 800,193 + CCNA_00742 0.30 +2.2 800,198 + CCNA_00742 0.30 +2.2 800,211 - CCNA_00742 0.32 -1.4 800,211 - CCNA_00742 0.32 -2.9 800,261 - CCNA_00742 0.38 -3.2 800,302 - CCNA_00742 0.42 -3.7 800,317 - CCNA_00742 0.44 -2.8 800,330 - CCNA_00742 0.46 -2.6 800,332 - CCNA_00742 0.46 -0.1 800,352 + CCNA_00742 0.48 +2.2 800,360 - CCNA_00742 0.49 -1.7 800,394 + CCNA_00742 0.53 +1.2 800,402 - CCNA_00742 0.54 -1.9 800,417 - CCNA_00742 0.56 -1.6 800,425 - CCNA_00742 0.57 -0.1 800,438 - CCNA_00742 0.58 -3.8 800,460 - CCNA_00742 0.61 -2.3 800,471 - CCNA_00742 0.62 -3.5 800,473 - CCNA_00742 0.62 -2.9 800,502 + CCNA_00742 0.66 -0.1 800,514 + CCNA_00742 0.67 +1.2 800,520 + CCNA_00742 0.68 +0.7 800,528 - CCNA_00742 0.69 -3.9 800,555 + CCNA_00742 0.72 +0.2 800,555 + CCNA_00742 0.72 +0.2 800,568 - CCNA_00742 0.73 -2.0 800,600 - CCNA_00742 0.77 -2.3 800,600 - CCNA_00742 0.77 -4.8 800,600 - CCNA_00742 0.77 -4.5 800,629 + CCNA_00742 0.80 +0.7 800,655 + CCNA_00742 0.83 +0.7 800,660 + CCNA_00742 0.84 +2.2 800,663 - CCNA_00742 0.84 -2.7 800,668 - CCNA_00742 0.85 -3.7 800,693 - CCNA_00742 0.88 -2.9 800,702 + CCNA_00742 0.89 +2.2 800,735 - -1.3 800,743 + +2.2 800,855 + -2.2 800,855 + -0.1 800,858 - -1.3 800,863 - -0.6 800,863 - -2.3 800,963 + -0.2 800,973 + -0.7 800,973 + -1.9 800,981 - +1.2 800,981 - +0.9 800,981 - -1.8 800,990 - +0.0 800,992 + +1.2 801,039 + CCNA_00743 0.17 -0.9 801,039 + CCNA_00743 0.17 -0.4 801,091 - CCNA_00743 0.26 +0.7 801,130 + CCNA_00743 0.33 -1.1 801,135 + CCNA_00743 0.34 -0.9 801,135 + CCNA_00743 0.34 +0.2 801,177 - CCNA_00743 0.41 -0.8 801,185 + CCNA_00743 0.43 +0.2 801,199 + CCNA_00743 0.45 -0.3 801,199 + CCNA_00743 0.45 -1.4 801,199 + CCNA_00743 0.45 +0.8 801,207 - CCNA_00743 0.46 +1.7 801,207 - CCNA_00743 0.46 +1.2 801,222 + CCNA_00743 0.49 +1.2 801,231 + CCNA_00743 0.51 -0.2 801,231 + CCNA_00743 0.51 -1.5 801,231 + CCNA_00743 0.51 +1.5 801,231 + CCNA_00743 0.51 -0.6 801,231 + CCNA_00743 0.51 -1.9 801,239 - CCNA_00743 0.52 -1.5 801,239 - CCNA_00743 0.52 +0.1 801,239 - CCNA_00743 0.52 -0.1 801,239 - CCNA_00743 0.52 +0.7 801,239 - CCNA_00743 0.52 -0.8 801,244 - CCNA_00743 0.53 +0.2 801,266 + CCNA_00743 0.57 +2.0 801,274 - CCNA_00743 0.58 -2.3 801,291 + CCNA_00743 0.61 -1.3 801,305 - CCNA_00743 0.64 -1.3 801,320 - CCNA_00743 0.66 -0.8 801,322 - CCNA_00743 0.67 +0.2 801,337 + CCNA_00743 0.69 -0.9 801,342 + CCNA_00743 0.70 -2.5 801,342 + CCNA_00743 0.70 -0.5 801,345 - CCNA_00743 0.71 -1.2 801,345 - CCNA_00743 0.71 -1.6 801,392 + CCNA_00743 0.79 -1.3 801,401 + CCNA_00743 0.81 +1.0 801,402 + CCNA_00743 0.81 +0.4 801,402 + CCNA_00743 0.81 -0.2 801,410 - CCNA_00743 0.82 -1.1 801,418 + CCNA_00743 0.84 +1.1 801,418 + CCNA_00743 0.84 +1.0 801,418 + CCNA_00743 0.84 +1.0 801,435 + CCNA_00743 0.87 -0.4 801,438 - CCNA_00743 0.87 +0.1 801,443 - CCNA_00743 0.88 +3.0 801,469 + +0.4 801,483 + -0.7 801,506 + -0.2 801,556 + -1.5 801,564 + -1.5 801,564 + -0.2 801,572 - -0.0 801,572 - -1.5 801,596 + -0.6 801,596 + +1.4 801,596 + -0.9 801,604 - -0.5 801,604 - +0.1 801,604 - +2.2 801,623 - -0.1 801,628 - -2.2 801,628 - -0.1 801,628 - +1.2 801,643 + -2.3 801,666 + +0.2 801,669 - -0.3 801,674 - +1.1 801,764 + +0.1 801,764 + -0.1 801,777 - -0.1 801,797 + CCNA_00744 0.16 +0.1
Or see this region's nucleotide sequence