Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00668

Experiment: PYE_noCalcium 25C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00667 and CCNA_00668 are separated by 10 nucleotidesCCNA_00668 and CCNA_00669 overlap by 4 nucleotides CCNA_00667: CCNA_00667 - lipopolysaccharide biosynthesis protein, at 723,506 to 724,690 _00667 CCNA_00668: CCNA_00668 - capsular polysaccharide biosynthesis protein, at 724,701 to 725,753 _00668 CCNA_00669: CCNA_00669 - glycosyltransferase family 99 protein WbsX, at 725,750 to 728,206 _00669 Position (kb) 724 725 726Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 723.755 kb on - strand, within CCNA_00667at 723.755 kb on - strand, within CCNA_00667at 723.768 kb on + strand, within CCNA_00667at 723.781 kb on - strand, within CCNA_00667at 723.788 kb on - strand, within CCNA_00667at 723.788 kb on - strand, within CCNA_00667at 723.792 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.879 kb on - strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.897 kb on - strand, within CCNA_00667at 723.897 kb on - strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.994 kb on - strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.035 kb on + strand, within CCNA_00667at 724.126 kb on + strand, within CCNA_00667at 724.134 kb on - strand, within CCNA_00667at 724.134 kb on - strand, within CCNA_00667at 724.150 kb on - strand, within CCNA_00667at 724.202 kb on - strand, within CCNA_00667at 724.231 kb on + strand, within CCNA_00667at 724.255 kb on + strand, within CCNA_00667at 724.255 kb on + strandat 724.255 kb on + strand, within CCNA_00667at 724.260 kb on + strand, within CCNA_00667at 724.268 kb on - strand, within CCNA_00667at 724.324 kb on - strand, within CCNA_00667at 724.381 kb on + strand, within CCNA_00667at 724.386 kb on - strand, within CCNA_00667at 724.427 kb on - strand, within CCNA_00667at 724.427 kb on - strand, within CCNA_00667at 724.432 kb on - strand, within CCNA_00667at 724.500 kb on - strand, within CCNA_00667at 724.564 kb on + strand, within CCNA_00667at 724.582 kb on - strandat 724.588 kb on - strandat 724.601 kb on - strandat 724.626 kb on + strandat 724.658 kb on - strandat 724.685 kb on + strandat 724.697 kb on + strandat 724.705 kb on - strandat 724.705 kb on - strandat 724.710 kb on - strandat 724.710 kb on - strandat 724.821 kb on + strand, within CCNA_00668at 724.834 kb on - strand, within CCNA_00668at 724.834 kb on - strand, within CCNA_00668at 724.876 kb on - strand, within CCNA_00668at 724.876 kb on - strand, within CCNA_00668at 724.896 kb on + strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.968 kb on + strand, within CCNA_00668at 724.968 kb on + strand, within CCNA_00668at 724.969 kb on + strand, within CCNA_00668at 724.970 kb on + strand, within CCNA_00668at 724.970 kb on + strand, within CCNA_00668at 724.976 kb on - strand, within CCNA_00668at 725.040 kb on - strand, within CCNA_00668at 725.064 kb on - strand, within CCNA_00668at 725.224 kb on + strand, within CCNA_00668at 725.228 kb on + strand, within CCNA_00668at 725.229 kb on + strand, within CCNA_00668at 725.232 kb on - strand, within CCNA_00668at 725.234 kb on + strand, within CCNA_00668at 725.237 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.264 kb on - strand, within CCNA_00668at 725.350 kb on + strand, within CCNA_00668at 725.359 kb on + strand, within CCNA_00668at 725.367 kb on - strand, within CCNA_00668at 725.377 kb on - strand, within CCNA_00668at 725.382 kb on + strand, within CCNA_00668at 725.391 kb on - strand, within CCNA_00668at 725.415 kb on + strand, within CCNA_00668at 725.437 kb on + strand, within CCNA_00668at 725.445 kb on - strand, within CCNA_00668at 725.458 kb on + strand, within CCNA_00668at 725.458 kb on + strand, within CCNA_00668at 725.458 kb on + strand, within CCNA_00668at 725.458 kb on + strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.469 kb on + strand, within CCNA_00668at 725.493 kb on + strand, within CCNA_00668at 725.527 kb on - strandat 725.534 kb on - strand, within CCNA_00668at 725.561 kb on + strand, within CCNA_00668at 725.561 kb on + strand, within CCNA_00668at 725.564 kb on - strand, within CCNA_00668at 725.565 kb on - strand, within CCNA_00668at 725.565 kb on - strand, within CCNA_00668at 725.605 kb on + strand, within CCNA_00668at 725.697 kb on + strandat 725.697 kb on + strandat 725.697 kb on + strandat 725.705 kb on - strandat 725.705 kb on - strandat 725.712 kb on - strandat 725.764 kb on - strandat 725.840 kb on + strandat 725.848 kb on - strandat 725.853 kb on - strandat 725.853 kb on - strandat 725.958 kb on + strandat 725.961 kb on - strandat 725.963 kb on + strandat 725.999 kb on + strand, within CCNA_00669at 726.018 kb on - strand, within CCNA_00669at 726.069 kb on - strand, within CCNA_00669at 726.097 kb on - strand, within CCNA_00669at 726.104 kb on - strand, within CCNA_00669at 726.120 kb on + strand, within CCNA_00669at 726.128 kb on - strand, within CCNA_00669at 726.128 kb on - strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.150 kb on + strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.158 kb on - strand, within CCNA_00669at 726.203 kb on + strand, within CCNA_00669at 726.206 kb on - strand, within CCNA_00669at 726.211 kb on - strand, within CCNA_00669at 726.216 kb on - strand, within CCNA_00669at 726.229 kb on - strand, within CCNA_00669at 726.236 kb on - strand, within CCNA_00669at 726.280 kb on - strand, within CCNA_00669at 726.280 kb on - strand, within CCNA_00669at 726.338 kb on - strand, within CCNA_00669at 726.342 kb on + strand, within CCNA_00669at 726.350 kb on - strand, within CCNA_00669at 726.350 kb on - strand, within CCNA_00669at 726.353 kb on + strand, within CCNA_00669at 726.361 kb on - strand, within CCNA_00669at 726.380 kb on + strand, within CCNA_00669at 726.403 kb on + strand, within CCNA_00669at 726.408 kb on + strand, within CCNA_00669at 726.408 kb on + strand, within CCNA_00669at 726.408 kb on + strand, within CCNA_00669at 726.408 kb on + strand, within CCNA_00669at 726.408 kb on + strand, within CCNA_00669at 726.411 kb on - strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.416 kb on - strand, within CCNA_00669at 726.436 kb on - strand, within CCNA_00669at 726.476 kb on + strand, within CCNA_00669at 726.486 kb on + strand, within CCNA_00669at 726.494 kb on - strand, within CCNA_00669at 726.494 kb on - strand, within CCNA_00669at 726.520 kb on - strand, within CCNA_00669at 726.592 kb on + strand, within CCNA_00669at 726.624 kb on + strand, within CCNA_00669at 726.632 kb on - strand, within CCNA_00669at 726.693 kb on + strand, within CCNA_00669at 726.693 kb on + strand, within CCNA_00669at 726.693 kb on + strand, within CCNA_00669at 726.701 kb on - strand, within CCNA_00669at 726.722 kb on - strand, within CCNA_00669at 726.727 kb on - strand, within CCNA_00669

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days
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723,755 - CCNA_00667 0.21 -2.3
723,755 - CCNA_00667 0.21 -2.2
723,768 + CCNA_00667 0.22 +0.2
723,781 - CCNA_00667 0.23 -3.4
723,788 - CCNA_00667 0.24 -0.9
723,788 - CCNA_00667 0.24 -1.4
723,792 + CCNA_00667 0.24 -1.7
723,797 + CCNA_00667 0.25 -2.2
723,797 + CCNA_00667 0.25 -0.6
723,805 - CCNA_00667 0.25 -4.4
723,805 - CCNA_00667 0.25 -3.8
723,805 - CCNA_00667 0.25 -3.3
723,879 - CCNA_00667 0.31 -2.2
723,889 + CCNA_00667 0.32 -0.3
723,897 - CCNA_00667 0.33 -5.3
723,897 - CCNA_00667 0.33 -3.1
723,950 + CCNA_00667 0.37 +1.2
723,950 + CCNA_00667 0.37 -0.1
723,950 + CCNA_00667 0.37 -1.5
723,958 - CCNA_00667 0.38 -0.3
723,958 - CCNA_00667 0.38 -3.0
723,958 - CCNA_00667 0.38 -3.4
723,994 - CCNA_00667 0.41 -3.8
724,016 + CCNA_00667 0.43 -1.1
724,035 + CCNA_00667 0.45 -4.4
724,126 + CCNA_00667 0.52 +0.7
724,134 - CCNA_00667 0.53 -1.8
724,134 - CCNA_00667 0.53 -2.6
724,150 - CCNA_00667 0.54 -3.7
724,202 - CCNA_00667 0.59 -3.9
724,231 + CCNA_00667 0.61 -1.8
724,255 + CCNA_00667 0.63 -3.4
724,255 + +0.2
724,255 + CCNA_00667 0.63 -1.8
724,260 + CCNA_00667 0.64 +0.7
724,268 - CCNA_00667 0.64 -2.1
724,324 - CCNA_00667 0.69 -3.1
724,381 + CCNA_00667 0.74 -1.1
724,386 - CCNA_00667 0.74 -4.1
724,427 - CCNA_00667 0.78 -2.9
724,427 - CCNA_00667 0.78 -0.3
724,432 - CCNA_00667 0.78 -1.5
724,500 - CCNA_00667 0.84 -3.3
724,564 + CCNA_00667 0.89 -2.0
724,582 - -0.9
724,588 - -0.8
724,601 - -3.5
724,626 + -0.1
724,658 - +0.2
724,685 + -0.0
724,697 + -0.5
724,705 - +0.2
724,705 - -0.2
724,710 - +0.2
724,710 - +1.2
724,821 + CCNA_00668 0.11 -0.9
724,834 - CCNA_00668 0.13 -0.8
724,834 - CCNA_00668 0.13 -0.8
724,876 - CCNA_00668 0.17 -1.3
724,876 - CCNA_00668 0.17 -2.4
724,896 + CCNA_00668 0.19 -2.9
724,948 + CCNA_00668 0.23 -2.4
724,948 + CCNA_00668 0.23 -1.2
724,968 + CCNA_00668 0.25 -0.9
724,968 + CCNA_00668 0.25 -2.9
724,969 + CCNA_00668 0.25 +1.2
724,970 + CCNA_00668 0.26 -0.1
724,970 + CCNA_00668 0.26 -2.0
724,976 - CCNA_00668 0.26 +0.1
725,040 - CCNA_00668 0.32 -1.3
725,064 - CCNA_00668 0.34 -0.5
725,224 + CCNA_00668 0.50 -2.3
725,228 + CCNA_00668 0.50 -1.6
725,229 + CCNA_00668 0.50 -2.9
725,232 - CCNA_00668 0.50 -1.2
725,234 + CCNA_00668 0.51 -1.5
725,237 - CCNA_00668 0.51 -2.7
725,259 - CCNA_00668 0.53 -3.2
725,259 - CCNA_00668 0.53 -1.8
725,264 - CCNA_00668 0.53 -3.6
725,350 + CCNA_00668 0.62 -0.6
725,359 + CCNA_00668 0.62 +0.0
725,367 - CCNA_00668 0.63 -2.2
725,377 - CCNA_00668 0.64 -4.1
725,382 + CCNA_00668 0.65 -2.9
725,391 - CCNA_00668 0.66 -0.8
725,415 + CCNA_00668 0.68 -0.9
725,437 + CCNA_00668 0.70 -1.2
725,445 - CCNA_00668 0.71 -2.3
725,458 + CCNA_00668 0.72 -1.8
725,458 + CCNA_00668 0.72 -0.2
725,458 + CCNA_00668 0.72 -1.3
725,458 + CCNA_00668 0.72 -1.9
725,466 - CCNA_00668 0.73 -0.2
725,466 - CCNA_00668 0.73 -3.3
725,466 - CCNA_00668 0.73 -1.9
725,469 + CCNA_00668 0.73 -2.7
725,493 + CCNA_00668 0.75 -1.2
725,527 - +0.2
725,534 - CCNA_00668 0.79 -4.0
725,561 + CCNA_00668 0.82 -2.2
725,561 + CCNA_00668 0.82 -0.6
725,564 - CCNA_00668 0.82 -1.8
725,565 - CCNA_00668 0.82 -4.0
725,565 - CCNA_00668 0.82 -2.2
725,605 + CCNA_00668 0.86 -3.0
725,697 + -0.4
725,697 + -1.9
725,697 + -1.8
725,705 - -2.8
725,705 - -1.2
725,712 - -2.0
725,764 - -1.1
725,840 + -3.1
725,848 - -1.4
725,853 - -1.3
725,853 - -4.2
725,958 + -2.5
725,961 - -2.2
725,963 + -0.3
725,999 + CCNA_00669 0.10 -3.1
726,018 - CCNA_00669 0.11 -3.6
726,069 - CCNA_00669 0.13 -2.5
726,097 - CCNA_00669 0.14 -2.1
726,104 - CCNA_00669 0.14 -4.7
726,120 + CCNA_00669 0.15 -3.3
726,128 - CCNA_00669 0.15 -3.2
726,128 - CCNA_00669 0.15 -2.6
726,150 + CCNA_00669 0.16 -3.8
726,150 + CCNA_00669 0.16 -2.3
726,150 + CCNA_00669 0.16 -2.2
726,150 + CCNA_00669 0.16 -2.0
726,150 + CCNA_00669 0.16 -1.5
726,150 + CCNA_00669 0.16 -3.1
726,150 + CCNA_00669 0.16 -2.0
726,150 + CCNA_00669 0.16 -2.2
726,150 + CCNA_00669 0.16 -1.8
726,150 + CCNA_00669 0.16 -1.9
726,158 - CCNA_00669 0.17 -4.1
726,158 - CCNA_00669 0.17 -4.5
726,158 - CCNA_00669 0.17 +0.2
726,158 - CCNA_00669 0.17 -3.9
726,158 - CCNA_00669 0.17 -3.8
726,158 - CCNA_00669 0.17 -1.9
726,158 - CCNA_00669 0.17 -4.1
726,158 - CCNA_00669 0.17 -3.4
726,158 - CCNA_00669 0.17 -5.1
726,158 - CCNA_00669 0.17 -4.5
726,158 - CCNA_00669 0.17 -2.0
726,158 - CCNA_00669 0.17 -3.8
726,158 - CCNA_00669 0.17 -6.4
726,158 - CCNA_00669 0.17 -3.3
726,203 + CCNA_00669 0.18 -2.4
726,206 - CCNA_00669 0.19 -5.8
726,211 - CCNA_00669 0.19 -5.4
726,216 - CCNA_00669 0.19 -2.5
726,229 - CCNA_00669 0.19 -3.3
726,236 - CCNA_00669 0.20 -4.4
726,280 - CCNA_00669 0.22 -2.0
726,280 - CCNA_00669 0.22 -3.7
726,338 - CCNA_00669 0.24 -2.9
726,342 + CCNA_00669 0.24 -2.4
726,350 - CCNA_00669 0.24 -3.7
726,350 - CCNA_00669 0.24 -3.3
726,353 + CCNA_00669 0.25 +1.2
726,361 - CCNA_00669 0.25 -3.5
726,380 + CCNA_00669 0.26 -0.6
726,403 + CCNA_00669 0.27 -1.9
726,408 + CCNA_00669 0.27 -0.1
726,408 + CCNA_00669 0.27 -0.9
726,408 + CCNA_00669 0.27 -0.1
726,408 + CCNA_00669 0.27 -2.0
726,408 + CCNA_00669 0.27 -1.1
726,411 - CCNA_00669 0.27 -4.0
726,416 - CCNA_00669 0.27 -1.9
726,416 - CCNA_00669 0.27 -2.8
726,416 - CCNA_00669 0.27 -3.3
726,416 - CCNA_00669 0.27 -4.2
726,436 - CCNA_00669 0.28 -1.1
726,476 + CCNA_00669 0.30 -0.3
726,486 + CCNA_00669 0.30 -3.4
726,494 - CCNA_00669 0.30 -3.4
726,494 - CCNA_00669 0.30 -3.9
726,520 - CCNA_00669 0.31 -3.0
726,592 + CCNA_00669 0.34 -3.2
726,624 + CCNA_00669 0.36 -5.3
726,632 - CCNA_00669 0.36 -2.8
726,693 + CCNA_00669 0.38 +0.7
726,693 + CCNA_00669 0.38 -2.0
726,693 + CCNA_00669 0.38 -0.9
726,701 - CCNA_00669 0.39 -2.6
726,722 - CCNA_00669 0.40 -4.0
726,727 - CCNA_00669 0.40 -2.2

Or see this region's nucleotide sequence