Experiment: PYE_noCalcium 25C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00542 and CCNA_00543 are separated by 48 nucleotides CCNA_00543 and CCNA_00544 are separated by 215 nucleotides CCNA_00544 and CCNA_00545 are separated by 70 nucleotides CCNA_00545 and CCNA_00546 are separated by 123 nucleotides
CCNA_00542: CCNA_00542 - hypothetical protein, at 561,341 to 561,664
_00542
CCNA_00543: CCNA_00543 - methyl-accepting chemotaxis protein, at 561,713 to 562,363
_00543
CCNA_00544: CCNA_00544 - acetyl-CoA acetyltransferase, at 562,579 to 563,754
_00544
CCNA_00545: CCNA_00545 - acetoacetyl-CoA reductase, at 563,825 to 564,547
_00545
CCNA_00546: CCNA_00546 - hypothetical protein, at 564,671 to 565,453
_00546
Position (kb) 562
563
564 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 561.594 kb on + strand, within CCNA_00542 at 561.665 kb on + strand at 561.665 kb on + strand at 561.668 kb on - strand at 561.672 kb on + strand at 561.672 kb on + strand at 561.672 kb on + strand at 561.673 kb on - strand at 561.680 kb on - strand at 561.680 kb on - strand at 561.686 kb on - strand at 561.711 kb on + strand at 561.711 kb on + strand at 561.711 kb on + strand at 561.719 kb on - strand at 561.719 kb on - strand at 561.797 kb on - strand, within CCNA_00543 at 561.908 kb on + strand, within CCNA_00543 at 561.925 kb on - strand, within CCNA_00543 at 561.966 kb on + strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.974 kb on - strand, within CCNA_00543 at 561.997 kb on - strand, within CCNA_00543 at 562.039 kb on + strand, within CCNA_00543 at 562.129 kb on - strand at 562.153 kb on - strand, within CCNA_00543 at 562.158 kb on - strand, within CCNA_00543 at 562.229 kb on - strand, within CCNA_00543 at 562.378 kb on - strand at 562.408 kb on - strand at 562.421 kb on + strand at 562.435 kb on + strand at 562.452 kb on - strand at 562.452 kb on - strand at 562.453 kb on - strand at 562.453 kb on - strand at 562.470 kb on - strand at 562.470 kb on - strand at 562.470 kb on - strand at 562.494 kb on - strand at 562.553 kb on + strand at 562.623 kb on - strand at 562.629 kb on + strand at 562.636 kb on + strand at 562.644 kb on - strand at 562.646 kb on + strand at 562.655 kb on + strand at 562.665 kb on + strand at 562.665 kb on + strand at 562.673 kb on - strand at 562.673 kb on - strand at 562.673 kb on - strand at 562.735 kb on - strand, within CCNA_00544 at 562.752 kb on - strand, within CCNA_00544 at 562.767 kb on + strand, within CCNA_00544 at 562.785 kb on - strand, within CCNA_00544 at 562.811 kb on + strand, within CCNA_00544 at 562.828 kb on - strand, within CCNA_00544 at 562.844 kb on + strand, within CCNA_00544 at 562.847 kb on - strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.849 kb on + strand, within CCNA_00544 at 562.852 kb on - strand, within CCNA_00544 at 562.857 kb on - strand, within CCNA_00544 at 562.891 kb on + strand, within CCNA_00544 at 562.909 kb on - strand, within CCNA_00544 at 562.926 kb on - strand, within CCNA_00544 at 562.947 kb on + strand, within CCNA_00544 at 562.949 kb on + strand, within CCNA_00544 at 562.949 kb on + strand, within CCNA_00544 at 562.949 kb on + strand, within CCNA_00544 at 562.957 kb on - strand, within CCNA_00544 at 562.957 kb on - strand, within CCNA_00544 at 563.012 kb on - strand, within CCNA_00544 at 563.047 kb on + strand, within CCNA_00544 at 563.055 kb on - strand, within CCNA_00544 at 563.055 kb on - strand, within CCNA_00544 at 563.055 kb on - strand, within CCNA_00544 at 563.056 kb on + strand, within CCNA_00544 at 563.056 kb on + strand, within CCNA_00544 at 563.064 kb on - strand, within CCNA_00544 at 563.078 kb on + strand, within CCNA_00544 at 563.095 kb on + strand, within CCNA_00544 at 563.103 kb on - strand, within CCNA_00544 at 563.173 kb on + strand, within CCNA_00544 at 563.199 kb on + strand, within CCNA_00544 at 563.208 kb on - strand, within CCNA_00544 at 563.221 kb on + strand, within CCNA_00544 at 563.222 kb on - strand, within CCNA_00544 at 563.229 kb on - strand, within CCNA_00544 at 563.257 kb on + strand, within CCNA_00544 at 563.317 kb on + strand, within CCNA_00544 at 563.317 kb on + strand, within CCNA_00544 at 563.325 kb on - strand, within CCNA_00544 at 563.344 kb on + strand, within CCNA_00544 at 563.344 kb on + strand, within CCNA_00544 at 563.344 kb on + strand, within CCNA_00544 at 563.354 kb on + strand, within CCNA_00544 at 563.362 kb on - strand, within CCNA_00544 at 563.391 kb on + strand, within CCNA_00544 at 563.391 kb on + strand, within CCNA_00544 at 563.399 kb on - strand, within CCNA_00544 at 563.399 kb on - strand, within CCNA_00544 at 563.399 kb on - strand, within CCNA_00544 at 563.423 kb on - strand, within CCNA_00544 at 563.494 kb on + strand, within CCNA_00544 at 563.507 kb on + strand, within CCNA_00544 at 563.521 kb on + strand, within CCNA_00544 at 563.521 kb on + strand, within CCNA_00544 at 563.529 kb on - strand, within CCNA_00544 at 563.542 kb on + strand, within CCNA_00544 at 563.545 kb on - strand, within CCNA_00544 at 563.549 kb on - strand, within CCNA_00544 at 563.562 kb on - strand, within CCNA_00544 at 563.574 kb on - strand, within CCNA_00544 at 563.575 kb on - strand, within CCNA_00544 at 563.619 kb on + strand, within CCNA_00544 at 563.638 kb on - strand at 563.649 kb on + strand at 563.692 kb on + strand at 563.714 kb on - strand at 563.720 kb on + strand at 563.746 kb on - strand at 563.748 kb on + strand at 563.748 kb on + strand at 563.748 kb on + strand at 563.748 kb on + strand at 563.756 kb on - strand at 563.760 kb on + strand at 563.760 kb on + strand at 563.760 kb on + strand at 563.760 kb on + strand at 563.768 kb on - strand at 563.768 kb on - strand at 563.942 kb on + strand, within CCNA_00545 at 563.942 kb on + strand, within CCNA_00545 at 563.952 kb on + strand, within CCNA_00545 at 563.983 kb on + strand, within CCNA_00545 at 563.983 kb on + strand at 563.983 kb on - strand, within CCNA_00545 at 564.007 kb on + strand, within CCNA_00545 at 564.015 kb on - strand, within CCNA_00545 at 564.029 kb on + strand, within CCNA_00545 at 564.036 kb on - strand, within CCNA_00545 at 564.095 kb on - strand at 564.097 kb on + strand, within CCNA_00545 at 564.100 kb on + strand, within CCNA_00545 at 564.108 kb on + strand, within CCNA_00545 at 564.108 kb on + strand, within CCNA_00545 at 564.113 kb on + strand, within CCNA_00545 at 564.116 kb on - strand, within CCNA_00545 at 564.116 kb on - strand, within CCNA_00545 at 564.120 kb on + strand, within CCNA_00545 at 564.120 kb on + strand, within CCNA_00545 at 564.121 kb on + strand, within CCNA_00545 at 564.128 kb on - strand, within CCNA_00545 at 564.149 kb on - strand, within CCNA_00545 at 564.183 kb on - strand, within CCNA_00545 at 564.183 kb on - strand, within CCNA_00545 at 564.212 kb on + strand, within CCNA_00545 at 564.220 kb on - strand, within CCNA_00545 at 564.225 kb on - strand, within CCNA_00545 at 564.225 kb on - strand, within CCNA_00545 at 564.242 kb on + strand, within CCNA_00545 at 564.256 kb on + strand, within CCNA_00545 at 564.276 kb on + strand, within CCNA_00545 at 564.290 kb on + strand, within CCNA_00545 at 564.302 kb on + strand, within CCNA_00545 at 564.303 kb on + strand, within CCNA_00545 at 564.310 kb on - strand, within CCNA_00545 at 564.313 kb on + strand, within CCNA_00545 at 564.320 kb on + strand, within CCNA_00545 at 564.320 kb on + strand, within CCNA_00545 at 564.328 kb on - strand, within CCNA_00545 at 564.344 kb on - strand, within CCNA_00545 at 564.434 kb on + strand, within CCNA_00545 at 564.502 kb on - strand at 564.502 kb on - strand at 564.507 kb on + strand at 564.507 kb on + strand at 564.507 kb on + strand at 564.507 kb on + strand at 564.513 kb on + strand at 564.515 kb on - strand at 564.515 kb on - strand at 564.515 kb on - strand at 564.535 kb on + strand at 564.538 kb on - strand at 564.538 kb on - strand at 564.538 kb on - strand at 564.543 kb on - strand at 564.543 kb on - strand at 564.550 kb on - strand at 564.571 kb on - strand at 564.571 kb on - strand at 564.589 kb on + strand at 564.601 kb on + strand at 564.607 kb on + strand at 564.622 kb on + strand at 564.656 kb on + strand at 564.656 kb on - strand at 564.660 kb on + strand at 564.675 kb on - strand at 564.716 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days remove 561,594 + CCNA_00542 0.78 -1.3 561,665 + -1.7 561,665 + -0.9 561,668 - +0.4 561,672 + -0.3 561,672 + -1.4 561,672 + -1.3 561,673 - +0.4 561,680 - +0.4 561,680 - -0.1 561,686 - -0.3 561,711 + -0.8 561,711 + -1.3 561,711 + -1.3 561,719 - +0.4 561,719 - +0.3 561,797 - CCNA_00543 0.13 -3.8 561,908 + CCNA_00543 0.30 +2.2 561,925 - CCNA_00543 0.33 -1.5 561,966 + CCNA_00543 0.39 +2.2 561,974 - CCNA_00543 0.40 -3.8 561,974 - CCNA_00543 0.40 +1.2 561,974 - CCNA_00543 0.40 -1.1 561,974 - CCNA_00543 0.40 +0.2 561,974 - CCNA_00543 0.40 -1.1 561,974 - CCNA_00543 0.40 -2.1 561,997 - CCNA_00543 0.44 -2.1 562,039 + CCNA_00543 0.50 +1.2 562,129 - +0.2 562,153 - CCNA_00543 0.68 -0.1 562,158 - CCNA_00543 0.68 -1.6 562,229 - CCNA_00543 0.79 -1.5 562,378 - -0.3 562,408 - +0.4 562,421 + -3.8 562,435 + -2.6 562,452 - -0.1 562,452 - +0.2 562,453 - -0.3 562,453 - -0.1 562,470 - +0.2 562,470 - -1.2 562,470 - +0.4 562,494 - -2.1 562,553 + +0.0 562,623 - +1.9 562,629 + +0.9 562,636 + +1.2 562,644 - +2.2 562,646 + +2.1 562,655 + +1.1 562,665 + +0.4 562,665 + +1.0 562,673 - +0.2 562,673 - -1.8 562,673 - +2.2 562,735 - CCNA_00544 0.13 +1.0 562,752 - CCNA_00544 0.15 +2.1 562,767 + CCNA_00544 0.16 +1.1 562,785 - CCNA_00544 0.18 +1.2 562,811 + CCNA_00544 0.20 +2.6 562,828 - CCNA_00544 0.21 +1.5 562,844 + CCNA_00544 0.23 +1.9 562,847 - CCNA_00544 0.23 -0.8 562,849 + CCNA_00544 0.23 +1.1 562,849 + CCNA_00544 0.23 +1.2 562,849 + CCNA_00544 0.23 +1.0 562,849 + CCNA_00544 0.23 +1.0 562,849 + CCNA_00544 0.23 +0.6 562,849 + CCNA_00544 0.23 +1.6 562,852 - CCNA_00544 0.23 +0.4 562,857 - CCNA_00544 0.24 +1.1 562,891 + CCNA_00544 0.27 +0.8 562,909 - CCNA_00544 0.28 +1.2 562,926 - CCNA_00544 0.30 -1.8 562,947 + CCNA_00544 0.31 +1.1 562,949 + CCNA_00544 0.31 +1.3 562,949 + CCNA_00544 0.31 -0.6 562,949 + CCNA_00544 0.31 +0.5 562,957 - CCNA_00544 0.32 +0.7 562,957 - CCNA_00544 0.32 +0.2 563,012 - CCNA_00544 0.37 -1.8 563,047 + CCNA_00544 0.40 -0.2 563,055 - CCNA_00544 0.40 +1.5 563,055 - CCNA_00544 0.40 +1.1 563,055 - CCNA_00544 0.40 -0.6 563,056 + CCNA_00544 0.41 +0.2 563,056 + CCNA_00544 0.41 +0.3 563,064 - CCNA_00544 0.41 -0.6 563,078 + CCNA_00544 0.42 +1.9 563,095 + CCNA_00544 0.44 +0.8 563,103 - CCNA_00544 0.45 -1.0 563,173 + CCNA_00544 0.51 +0.8 563,199 + CCNA_00544 0.53 +1.2 563,208 - CCNA_00544 0.53 +0.8 563,221 + CCNA_00544 0.55 +0.3 563,222 - CCNA_00544 0.55 -1.2 563,229 - CCNA_00544 0.55 +0.2 563,257 + CCNA_00544 0.58 +1.1 563,317 + CCNA_00544 0.63 +2.1 563,317 + CCNA_00544 0.63 +2.3 563,325 - CCNA_00544 0.63 +0.2 563,344 + CCNA_00544 0.65 -1.0 563,344 + CCNA_00544 0.65 -2.6 563,344 + CCNA_00544 0.65 +0.2 563,354 + CCNA_00544 0.66 +0.2 563,362 - CCNA_00544 0.67 -3.0 563,391 + CCNA_00544 0.69 +0.7 563,391 + CCNA_00544 0.69 +0.9 563,399 - CCNA_00544 0.70 -0.3 563,399 - CCNA_00544 0.70 +0.2 563,399 - CCNA_00544 0.70 -0.1 563,423 - CCNA_00544 0.72 -0.6 563,494 + CCNA_00544 0.78 +0.3 563,507 + CCNA_00544 0.79 -1.8 563,521 + CCNA_00544 0.80 -1.3 563,521 + CCNA_00544 0.80 +1.5 563,529 - CCNA_00544 0.81 -1.6 563,542 + CCNA_00544 0.82 +1.4 563,545 - CCNA_00544 0.82 -0.3 563,549 - CCNA_00544 0.82 -0.3 563,562 - CCNA_00544 0.84 -0.3 563,574 - CCNA_00544 0.85 -0.9 563,575 - CCNA_00544 0.85 -2.7 563,619 + CCNA_00544 0.88 -2.8 563,638 - -0.3 563,649 + -0.7 563,692 + -1.6 563,714 - +1.2 563,720 + -2.4 563,746 - -1.3 563,748 + -0.4 563,748 + -0.1 563,748 + +0.1 563,748 + -0.6 563,756 - -1.9 563,760 + -1.3 563,760 + -0.8 563,760 + -0.4 563,760 + -4.1 563,768 - -1.1 563,768 - -0.2 563,942 + CCNA_00545 0.16 +2.3 563,942 + CCNA_00545 0.16 +2.0 563,952 + CCNA_00545 0.18 +1.4 563,983 + CCNA_00545 0.22 +2.5 563,983 + +3.8 563,983 - CCNA_00545 0.22 +2.2 564,007 + CCNA_00545 0.25 +2.1 564,015 - CCNA_00545 0.26 +2.7 564,029 + CCNA_00545 0.28 +2.1 564,036 - CCNA_00545 0.29 +4.2 564,095 - +3.2 564,097 + CCNA_00545 0.38 +2.9 564,100 + CCNA_00545 0.38 +1.3 564,108 + CCNA_00545 0.39 +3.2 564,108 + CCNA_00545 0.39 +2.5 564,113 + CCNA_00545 0.40 +2.2 564,116 - CCNA_00545 0.40 +2.4 564,116 - CCNA_00545 0.40 +0.3 564,120 + CCNA_00545 0.41 +2.1 564,120 + CCNA_00545 0.41 +2.3 564,121 + CCNA_00545 0.41 +1.7 564,128 - CCNA_00545 0.42 +1.7 564,149 - CCNA_00545 0.45 +2.5 564,183 - CCNA_00545 0.50 +2.5 564,183 - CCNA_00545 0.50 +2.1 564,212 + CCNA_00545 0.54 +2.2 564,220 - CCNA_00545 0.55 +1.0 564,225 - CCNA_00545 0.55 +2.8 564,225 - CCNA_00545 0.55 +2.6 564,242 + CCNA_00545 0.58 +2.5 564,256 + CCNA_00545 0.60 +2.4 564,276 + CCNA_00545 0.62 +2.4 564,290 + CCNA_00545 0.64 +2.5 564,302 + CCNA_00545 0.66 +2.5 564,303 + CCNA_00545 0.66 +2.4 564,310 - CCNA_00545 0.67 +1.2 564,313 + CCNA_00545 0.67 +2.4 564,320 + CCNA_00545 0.68 +2.3 564,320 + CCNA_00545 0.68 +2.3 564,328 - CCNA_00545 0.70 +2.0 564,344 - CCNA_00545 0.72 -1.0 564,434 + CCNA_00545 0.84 +2.4 564,502 - +2.0 564,502 - +1.2 564,507 + +4.2 564,507 + +2.8 564,507 + +1.8 564,507 + +2.0 564,513 + +3.3 564,515 - +3.7 564,515 - +4.0 564,515 - +2.7 564,535 + +2.7 564,538 - +1.4 564,538 - +1.9 564,538 - +1.2 564,543 - +2.2 564,543 - +1.5 564,550 - +1.9 564,571 - +0.9 564,571 - +1.8 564,589 + +0.8 564,601 + +1.3 564,607 + -2.6 564,622 + +0.2 564,656 + +0.4 564,656 - -0.6 564,660 + +1.1 564,675 - +0.2 564,716 + -1.6
Or see this region's nucleotide sequence