Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00507

Experiment: PYE_noCalcium 25C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00506 and CCNA_00507 are separated by 5 nucleotidesCCNA_00507 and CCNA_00508 are separated by 67 nucleotidesCCNA_00508 and CCNA_00509 are separated by 65 nucleotides CCNA_00506: CCNA_00506 - cytochrome b, at 520,955 to 522,235 _00506 CCNA_00507: CCNA_00507 - cytochrome c1, at 522,241 to 523,086 _00507 CCNA_00508: CCNA_00508 - aspartate protease, at 523,154 to 523,927 _00508 CCNA_00509: CCNA_00509 - phosphoglycerate mutase family, at 523,993 to 524,526 _00509 Position (kb) 522 523 524Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 521.299 kb on + strand, within CCNA_00506at 521.299 kb on + strand, within CCNA_00506at 521.311 kb on + strand, within CCNA_00506at 521.393 kb on + strand, within CCNA_00506at 521.398 kb on + strand, within CCNA_00506at 521.424 kb on + strand, within CCNA_00506at 521.429 kb on + strand, within CCNA_00506at 521.481 kb on + strand, within CCNA_00506at 521.509 kb on + strand, within CCNA_00506at 521.587 kb on + strand, within CCNA_00506at 521.587 kb on + strand, within CCNA_00506at 521.609 kb on + strand, within CCNA_00506at 521.609 kb on + strand, within CCNA_00506at 521.609 kb on + strand, within CCNA_00506at 521.654 kb on + strand, within CCNA_00506at 521.725 kb on - strand, within CCNA_00506at 521.799 kb on - strand, within CCNA_00506at 521.931 kb on + strand, within CCNA_00506at 522.063 kb on + strand, within CCNA_00506at 522.071 kb on - strand, within CCNA_00506at 522.073 kb on + strand, within CCNA_00506at 522.083 kb on + strand, within CCNA_00506at 522.083 kb on + strand, within CCNA_00506at 522.277 kb on + strandat 522.375 kb on + strand, within CCNA_00507at 522.375 kb on + strand, within CCNA_00507at 522.418 kb on + strand, within CCNA_00507at 522.519 kb on + strand, within CCNA_00507at 522.707 kb on + strand, within CCNA_00507at 522.717 kb on + strand, within CCNA_00507at 522.740 kb on + strand, within CCNA_00507at 522.770 kb on + strand, within CCNA_00507at 522.783 kb on - strand, within CCNA_00507at 522.933 kb on + strand, within CCNA_00507at 522.933 kb on + strand, within CCNA_00507at 522.977 kb on + strand, within CCNA_00507at 522.977 kb on + strand, within CCNA_00507at 522.985 kb on - strand, within CCNA_00507at 523.019 kb on + strandat 523.041 kb on + strandat 523.049 kb on - strandat 523.172 kb on + strandat 523.252 kb on + strand, within CCNA_00508at 523.252 kb on + strand, within CCNA_00508at 523.252 kb on + strand, within CCNA_00508at 523.260 kb on - strand, within CCNA_00508at 523.260 kb on - strand, within CCNA_00508at 523.278 kb on + strand, within CCNA_00508at 523.369 kb on - strand, within CCNA_00508at 523.491 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.523 kb on + strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.586 kb on - strand, within CCNA_00508at 523.735 kb on + strand, within CCNA_00508at 523.748 kb on - strand, within CCNA_00508at 523.748 kb on - strand, within CCNA_00508at 523.755 kb on - strand, within CCNA_00508at 523.778 kb on - strand, within CCNA_00508at 523.814 kb on + strand, within CCNA_00508at 523.836 kb on + strand, within CCNA_00508at 523.844 kb on - strand, within CCNA_00508at 523.878 kb on + strandat 523.883 kb on + strandat 523.886 kb on - strandat 523.886 kb on - strandat 523.891 kb on - strandat 523.931 kb on - strandat 523.935 kb on + strandat 523.945 kb on + strandat 523.945 kb on + strandat 523.945 kb on + strandat 523.953 kb on - strandat 523.953 kb on - strandat 523.953 kb on - strandat 523.970 kb on + strandat 523.988 kb on - strandat 524.008 kb on + strandat 524.008 kb on + strandat 524.008 kb on + strandat 524.024 kb on + strandat 524.058 kb on + strand, within CCNA_00509

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days
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521,299 + CCNA_00506 0.27 -2.8
521,299 + CCNA_00506 0.27 -2.3
521,311 + CCNA_00506 0.28 -3.0
521,393 + CCNA_00506 0.34 -1.1
521,398 + CCNA_00506 0.35 -0.1
521,424 + CCNA_00506 0.37 -3.7
521,429 + CCNA_00506 0.37 -2.3
521,481 + CCNA_00506 0.41 -2.2
521,509 + CCNA_00506 0.43 -1.1
521,587 + CCNA_00506 0.49 -3.8
521,587 + CCNA_00506 0.49 -3.8
521,609 + CCNA_00506 0.51 -4.9
521,609 + CCNA_00506 0.51 -5.9
521,609 + CCNA_00506 0.51 -4.0
521,654 + CCNA_00506 0.55 -3.6
521,725 - CCNA_00506 0.60 +2.2
521,799 - CCNA_00506 0.66 +1.2
521,931 + CCNA_00506 0.76 -5.2
522,063 + CCNA_00506 0.86 -2.6
522,071 - CCNA_00506 0.87 +2.2
522,073 + CCNA_00506 0.87 -4.9
522,083 + CCNA_00506 0.88 -4.1
522,083 + CCNA_00506 0.88 -4.1
522,277 + -3.2
522,375 + CCNA_00507 0.16 -1.8
522,375 + CCNA_00507 0.16 -1.8
522,418 + CCNA_00507 0.21 -3.4
522,519 + CCNA_00507 0.33 -2.8
522,707 + CCNA_00507 0.55 -4.2
522,717 + CCNA_00507 0.56 -3.5
522,740 + CCNA_00507 0.59 -3.3
522,770 + CCNA_00507 0.63 -3.2
522,783 - CCNA_00507 0.64 +0.6
522,933 + CCNA_00507 0.82 -1.2
522,933 + CCNA_00507 0.82 -4.1
522,977 + CCNA_00507 0.87 -2.1
522,977 + CCNA_00507 0.87 -2.0
522,985 - CCNA_00507 0.88 +2.2
523,019 + -3.5
523,041 + -0.2
523,049 - +0.6
523,172 + -0.2
523,252 + CCNA_00508 0.13 -0.2
523,252 + CCNA_00508 0.13 +0.8
523,252 + CCNA_00508 0.13 +0.2
523,260 - CCNA_00508 0.14 -0.3
523,260 - CCNA_00508 0.14 -1.3
523,278 + CCNA_00508 0.16 -0.1
523,369 - CCNA_00508 0.28 -0.8
523,491 + CCNA_00508 0.44 -0.5
523,518 + CCNA_00508 0.47 +0.1
523,518 + CCNA_00508 0.47 -0.8
523,518 + CCNA_00508 0.47 +0.2
523,518 + CCNA_00508 0.47 -1.3
523,518 + CCNA_00508 0.47 +1.6
523,518 + CCNA_00508 0.47 -2.5
523,518 + CCNA_00508 0.47 -0.8
523,518 + CCNA_00508 0.47 +2.0
523,518 + CCNA_00508 0.47 -0.4
523,518 + CCNA_00508 0.47 -1.5
523,518 + CCNA_00508 0.47 -0.6
523,523 + CCNA_00508 0.48 -0.3
523,526 - CCNA_00508 0.48 -1.2
523,526 - CCNA_00508 0.48 -0.7
523,526 - CCNA_00508 0.48 -0.4
523,526 - CCNA_00508 0.48 -0.1
523,526 - CCNA_00508 0.48 -0.1
523,526 - CCNA_00508 0.48 -0.5
523,526 - CCNA_00508 0.48 +0.0
523,526 - CCNA_00508 0.48 +0.3
523,526 - CCNA_00508 0.48 +0.1
523,526 - CCNA_00508 0.48 -0.5
523,526 - CCNA_00508 0.48 -0.8
523,586 - CCNA_00508 0.56 +0.5
523,735 + CCNA_00508 0.75 -0.5
523,748 - CCNA_00508 0.77 -0.2
523,748 - CCNA_00508 0.77 -0.8
523,755 - CCNA_00508 0.78 -0.5
523,778 - CCNA_00508 0.81 +1.2
523,814 + CCNA_00508 0.85 -1.2
523,836 + CCNA_00508 0.88 +0.2
523,844 - CCNA_00508 0.89 +0.4
523,878 + -0.4
523,883 + -1.2
523,886 - -1.0
523,886 - -1.2
523,891 - -1.7
523,931 - -0.2
523,935 + +0.9
523,945 + -1.1
523,945 + +0.0
523,945 + +0.1
523,953 - -0.4
523,953 - -1.2
523,953 - -0.4
523,970 + -0.5
523,988 - -0.0
524,008 + +1.1
524,008 + +0.7
524,008 + +0.8
524,024 + +0.2
524,058 + CCNA_00509 0.12 +1.2

Or see this region's nucleotide sequence