Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00395

Experiment: PYE_noCalcium 25C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00393 and CCNA_00394 overlap by 4 nucleotidesCCNA_00394 and CCNA_00395 are separated by 152 nucleotidesCCNA_00395 and CCNA_00396 are separated by 90 nucleotidesCCNA_00396 and CCNA_00397 are separated by 130 nucleotides CCNA_00393: CCNA_00393 - RNA polymerase sigma factor, at 409,326 to 410,552 _00393 CCNA_00394: CCNA_00394 - YCII-related domain protein, at 410,549 to 410,899 _00394 CCNA_00395: CCNA_00395 - feruloyl-CoA synthetase, at 411,052 to 412,842 _00395 CCNA_00396: CCNA_00396 - hypothetical protein, at 412,933 to 413,610 _00396 CCNA_00397: CCNA_00397 - acetolactate synthase, at 413,741 to 415,279 _00397 Position (kb) 411 412 413Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 410.097 kb on + strand, within CCNA_00393at 410.105 kb on - strand, within CCNA_00393at 410.105 kb on - strand, within CCNA_00393at 410.105 kb on - strand, within CCNA_00393at 410.180 kb on + strand, within CCNA_00393at 410.181 kb on + strand, within CCNA_00393at 410.189 kb on - strand, within CCNA_00393at 410.189 kb on - strand, within CCNA_00393at 410.226 kb on + strand, within CCNA_00393at 410.274 kb on + strand, within CCNA_00393at 410.277 kb on + strand, within CCNA_00393at 410.278 kb on + strand, within CCNA_00393at 410.279 kb on + strand, within CCNA_00393at 410.283 kb on + strand, within CCNA_00393at 410.285 kb on + strand, within CCNA_00393at 410.290 kb on + strand, within CCNA_00393at 410.298 kb on - strand, within CCNA_00393at 410.323 kb on + strand, within CCNA_00393at 410.369 kb on + strand, within CCNA_00393at 410.427 kb on - strand, within CCNA_00393at 410.445 kb on + strandat 410.452 kb on + strandat 410.460 kb on - strandat 410.460 kb on - strandat 410.471 kb on + strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.546 kb on + strandat 410.555 kb on - strandat 410.555 kb on - strandat 410.573 kb on + strandat 410.581 kb on - strandat 410.581 kb on - strandat 410.600 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.623 kb on + strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.653 kb on + strand, within CCNA_00394at 410.653 kb on + strand, within CCNA_00394at 410.669 kb on + strand, within CCNA_00394at 410.678 kb on + strand, within CCNA_00394at 410.693 kb on - strand, within CCNA_00394at 410.693 kb on - strand, within CCNA_00394at 410.693 kb on - strand, within CCNA_00394at 410.696 kb on + strand, within CCNA_00394at 410.704 kb on + strand, within CCNA_00394at 410.726 kb on + strand, within CCNA_00394at 410.731 kb on + strand, within CCNA_00394at 410.753 kb on + strand, within CCNA_00394at 410.753 kb on + strand, within CCNA_00394at 410.759 kb on + strand, within CCNA_00394at 410.761 kb on - strand, within CCNA_00394at 410.761 kb on - strand, within CCNA_00394at 410.767 kb on - strand, within CCNA_00394at 410.783 kb on + strand, within CCNA_00394at 410.851 kb on + strand, within CCNA_00394at 410.901 kb on + strandat 410.903 kb on + strandat 410.948 kb on - strandat 411.023 kb on - strandat 411.025 kb on + strandat 411.025 kb on + strandat 411.033 kb on - strandat 411.035 kb on - strandat 411.057 kb on - strandat 411.064 kb on + strandat 411.072 kb on - strandat 411.084 kb on - strandat 411.089 kb on - strandat 411.137 kb on + strandat 411.144 kb on - strandat 411.145 kb on - strandat 411.145 kb on - strandat 411.145 kb on - strandat 411.145 kb on - strandat 411.155 kb on - strandat 411.155 kb on - strandat 411.162 kb on - strandat 411.164 kb on + strandat 411.180 kb on + strandat 411.180 kb on + strandat 411.180 kb on + strandat 411.180 kb on + strandat 411.206 kb on + strandat 411.217 kb on + strandat 411.272 kb on + strand, within CCNA_00395at 411.272 kb on + strand, within CCNA_00395at 411.294 kb on + strand, within CCNA_00395at 411.294 kb on + strand, within CCNA_00395at 411.331 kb on - strand, within CCNA_00395at 411.331 kb on - strand, within CCNA_00395at 411.331 kb on - strand, within CCNA_00395at 411.340 kb on + strand, within CCNA_00395at 411.341 kb on - strand, within CCNA_00395at 411.436 kb on + strand, within CCNA_00395at 411.445 kb on + strand, within CCNA_00395at 411.447 kb on + strand, within CCNA_00395at 411.458 kb on - strand, within CCNA_00395at 411.468 kb on - strand, within CCNA_00395at 411.555 kb on + strand, within CCNA_00395at 411.646 kb on + strand, within CCNA_00395at 411.655 kb on + strand, within CCNA_00395at 411.657 kb on + strand, within CCNA_00395at 411.665 kb on - strand, within CCNA_00395at 411.717 kb on + strand, within CCNA_00395at 411.717 kb on + strand, within CCNA_00395at 411.717 kb on + strand, within CCNA_00395at 411.717 kb on + strand, within CCNA_00395at 411.725 kb on - strand, within CCNA_00395at 411.725 kb on - strand, within CCNA_00395at 411.751 kb on + strand, within CCNA_00395at 411.756 kb on + strand, within CCNA_00395at 411.773 kb on - strand, within CCNA_00395at 411.785 kb on + strand, within CCNA_00395at 411.793 kb on - strand, within CCNA_00395at 411.838 kb on + strand, within CCNA_00395at 411.843 kb on + strandat 411.846 kb on - strand, within CCNA_00395at 411.850 kb on + strand, within CCNA_00395at 411.858 kb on - strand, within CCNA_00395at 411.858 kb on - strand, within CCNA_00395at 411.858 kb on - strand, within CCNA_00395at 411.894 kb on - strand, within CCNA_00395at 411.919 kb on + strand, within CCNA_00395at 411.919 kb on + strand, within CCNA_00395at 411.919 kb on + strand, within CCNA_00395at 411.928 kb on - strand, within CCNA_00395at 411.930 kb on + strand, within CCNA_00395at 411.937 kb on - strand, within CCNA_00395at 411.946 kb on + strand, within CCNA_00395at 411.964 kb on - strand, within CCNA_00395at 412.030 kb on + strand, within CCNA_00395at 412.035 kb on + strand, within CCNA_00395at 412.086 kb on - strand, within CCNA_00395at 412.089 kb on + strand, within CCNA_00395at 412.095 kb on + strand, within CCNA_00395at 412.097 kb on - strand, within CCNA_00395at 412.123 kb on + strand, within CCNA_00395at 412.149 kb on - strand, within CCNA_00395at 412.153 kb on + strand, within CCNA_00395at 412.153 kb on + strand, within CCNA_00395at 412.153 kb on + strand, within CCNA_00395at 412.161 kb on - strand, within CCNA_00395at 412.203 kb on + strand, within CCNA_00395at 412.208 kb on + strand, within CCNA_00395at 412.208 kb on + strand, within CCNA_00395at 412.218 kb on + strand, within CCNA_00395at 412.255 kb on + strand, within CCNA_00395at 412.258 kb on - strand, within CCNA_00395at 412.258 kb on - strand, within CCNA_00395at 412.258 kb on - strand, within CCNA_00395at 412.291 kb on + strand, within CCNA_00395at 412.297 kb on - strand, within CCNA_00395at 412.310 kb on + strand, within CCNA_00395at 412.320 kb on + strand, within CCNA_00395at 412.328 kb on - strand, within CCNA_00395at 412.333 kb on + strand, within CCNA_00395at 412.399 kb on - strand, within CCNA_00395at 412.411 kb on + strand, within CCNA_00395at 412.422 kb on - strand, within CCNA_00395at 412.460 kb on - strand, within CCNA_00395at 412.471 kb on - strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.541 kb on - strand, within CCNA_00395at 412.546 kb on + strand, within CCNA_00395at 412.546 kb on + strand, within CCNA_00395at 412.556 kb on + strand, within CCNA_00395at 412.562 kb on + strand, within CCNA_00395at 412.588 kb on - strand, within CCNA_00395at 412.597 kb on + strand, within CCNA_00395at 412.599 kb on + strand, within CCNA_00395at 412.658 kb on - strand, within CCNA_00395at 412.662 kb on + strand, within CCNA_00395at 412.676 kb on - strandat 412.676 kb on - strandat 412.694 kb on + strandat 412.709 kb on - strandat 412.746 kb on + strandat 412.746 kb on + strandat 412.754 kb on - strandat 412.836 kb on + strandat 412.836 kb on + strandat 412.859 kb on - strandat 412.888 kb on - strandat 412.895 kb on + strandat 412.895 kb on + strandat 412.895 kb on + strandat 412.895 kb on + strandat 412.900 kb on + strandat 412.900 kb on + strandat 412.903 kb on - strandat 412.903 kb on - strandat 412.956 kb on - strandat 413.001 kb on + strand, within CCNA_00396at 413.011 kb on + strand, within CCNA_00396at 413.035 kb on - strand, within CCNA_00396at 413.037 kb on - strand, within CCNA_00396at 413.037 kb on - strand, within CCNA_00396at 413.040 kb on + strand, within CCNA_00396at 413.055 kb on - strand, within CCNA_00396at 413.095 kb on + strand, within CCNA_00396at 413.097 kb on - strand, within CCNA_00396at 413.141 kb on + strand, within CCNA_00396at 413.141 kb on + strand, within CCNA_00396at 413.161 kb on + strand, within CCNA_00396at 413.169 kb on - strand, within CCNA_00396at 413.169 kb on - strand, within CCNA_00396at 413.169 kb on - strand, within CCNA_00396at 413.186 kb on + strand, within CCNA_00396at 413.186 kb on + strand, within CCNA_00396at 413.195 kb on + strand, within CCNA_00396at 413.203 kb on - strand, within CCNA_00396at 413.203 kb on - strand, within CCNA_00396at 413.208 kb on - strand, within CCNA_00396at 413.212 kb on - strand, within CCNA_00396at 413.244 kb on - strand, within CCNA_00396at 413.289 kb on + strand, within CCNA_00396at 413.292 kb on + strand, within CCNA_00396at 413.297 kb on + strand, within CCNA_00396at 413.297 kb on + strand, within CCNA_00396at 413.305 kb on - strand, within CCNA_00396at 413.313 kb on + strand, within CCNA_00396at 413.321 kb on - strand, within CCNA_00396at 413.321 kb on - strand, within CCNA_00396at 413.410 kb on - strand, within CCNA_00396at 413.412 kb on - strand, within CCNA_00396at 413.435 kb on - strand, within CCNA_00396at 413.465 kb on - strand, within CCNA_00396at 413.494 kb on + strand, within CCNA_00396at 413.524 kb on + strand, within CCNA_00396at 413.537 kb on - strand, within CCNA_00396at 413.546 kb on + strandat 413.669 kb on + strandat 413.693 kb on - strandat 413.726 kb on + strandat 413.825 kb on - strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days
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410,097 + CCNA_00393 0.63 -0.0
410,105 - CCNA_00393 0.63 -0.4
410,105 - CCNA_00393 0.63 -0.6
410,105 - CCNA_00393 0.63 +0.4
410,180 + CCNA_00393 0.70 -1.0
410,181 + CCNA_00393 0.70 -1.6
410,189 - CCNA_00393 0.70 -0.7
410,189 - CCNA_00393 0.70 -1.6
410,226 + CCNA_00393 0.73 -2.2
410,274 + CCNA_00393 0.77 +0.8
410,277 + CCNA_00393 0.78 +1.1
410,278 + CCNA_00393 0.78 -0.4
410,279 + CCNA_00393 0.78 -0.4
410,283 + CCNA_00393 0.78 -0.4
410,285 + CCNA_00393 0.78 -0.4
410,290 + CCNA_00393 0.79 +0.1
410,298 - CCNA_00393 0.79 -0.3
410,323 + CCNA_00393 0.81 -0.1
410,369 + CCNA_00393 0.85 -1.7
410,427 - CCNA_00393 0.90 -0.9
410,445 + -0.2
410,452 + +0.9
410,460 - -1.8
410,460 - +0.5
410,471 + +1.1
410,479 - -0.6
410,479 - -0.2
410,479 - +0.3
410,479 - +0.2
410,479 - -2.4
410,479 - -0.4
410,546 + +0.8
410,555 - +0.5
410,555 - +0.7
410,573 + -1.4
410,581 - -0.0
410,581 - -0.4
410,600 + CCNA_00394 0.15 +1.1
410,618 + CCNA_00394 0.20 -1.4
410,618 + CCNA_00394 0.20 -1.4
410,618 + CCNA_00394 0.20 +0.7
410,618 + CCNA_00394 0.20 -0.9
410,618 + CCNA_00394 0.20 -1.0
410,623 + CCNA_00394 0.21 +0.3
410,626 - CCNA_00394 0.22 +1.1
410,626 - CCNA_00394 0.22 -1.2
410,626 - CCNA_00394 0.22 -0.7
410,626 - CCNA_00394 0.22 +0.8
410,626 - CCNA_00394 0.22 +0.9
410,653 + CCNA_00394 0.30 +1.3
410,653 + CCNA_00394 0.30 +0.1
410,669 + CCNA_00394 0.34 -0.2
410,678 + CCNA_00394 0.37 -1.2
410,693 - CCNA_00394 0.41 -1.1
410,693 - CCNA_00394 0.41 -1.2
410,693 - CCNA_00394 0.41 -1.6
410,696 + CCNA_00394 0.42 -0.7
410,704 + CCNA_00394 0.44 -0.1
410,726 + CCNA_00394 0.50 -1.1
410,731 + CCNA_00394 0.52 +0.5
410,753 + CCNA_00394 0.58 +0.8
410,753 + CCNA_00394 0.58 -2.2
410,759 + CCNA_00394 0.60 -0.2
410,761 - CCNA_00394 0.60 +2.1
410,761 - CCNA_00394 0.60 +0.4
410,767 - CCNA_00394 0.62 -0.7
410,783 + CCNA_00394 0.67 +0.6
410,851 + CCNA_00394 0.86 -0.1
410,901 + +2.1
410,903 + -2.5
410,948 - +2.5
411,023 - -0.8
411,025 + -0.4
411,025 + +0.7
411,033 - +0.5
411,035 - +0.3
411,057 - +0.5
411,064 + -0.9
411,072 - +0.6
411,084 - -0.3
411,089 - -1.7
411,137 + +1.1
411,144 - -3.3
411,145 - -0.9
411,145 - -2.4
411,145 - -1.4
411,145 - -2.4
411,155 - -1.2
411,155 - -1.5
411,162 - -3.4
411,164 + -1.6
411,180 + -2.0
411,180 + -1.7
411,180 + -1.8
411,180 + -2.2
411,206 + -1.6
411,217 + +2.1
411,272 + CCNA_00395 0.12 -0.9
411,272 + CCNA_00395 0.12 -1.1
411,294 + CCNA_00395 0.14 -4.1
411,294 + CCNA_00395 0.14 -3.4
411,331 - CCNA_00395 0.16 -2.0
411,331 - CCNA_00395 0.16 -3.4
411,331 - CCNA_00395 0.16 -2.0
411,340 + CCNA_00395 0.16 -2.3
411,341 - CCNA_00395 0.16 +2.1
411,436 + CCNA_00395 0.21 -3.4
411,445 + CCNA_00395 0.22 -2.8
411,447 + CCNA_00395 0.22 -1.9
411,458 - CCNA_00395 0.23 -0.7
411,468 - CCNA_00395 0.23 -1.2
411,555 + CCNA_00395 0.28 +0.1
411,646 + CCNA_00395 0.33 -2.2
411,655 + CCNA_00395 0.34 -3.8
411,657 + CCNA_00395 0.34 -0.0
411,665 - CCNA_00395 0.34 -0.7
411,717 + CCNA_00395 0.37 -1.4
411,717 + CCNA_00395 0.37 +0.5
411,717 + CCNA_00395 0.37 -0.9
411,717 + CCNA_00395 0.37 -0.9
411,725 - CCNA_00395 0.38 +0.3
411,725 - CCNA_00395 0.38 +0.1
411,751 + CCNA_00395 0.39 -1.2
411,756 + CCNA_00395 0.39 -2.1
411,773 - CCNA_00395 0.40 -0.7
411,785 + CCNA_00395 0.41 -2.6
411,793 - CCNA_00395 0.41 -2.6
411,838 + CCNA_00395 0.44 -3.3
411,843 + +1.1
411,846 - CCNA_00395 0.44 -0.9
411,850 + CCNA_00395 0.45 -0.6
411,858 - CCNA_00395 0.45 -1.4
411,858 - CCNA_00395 0.45 -2.2
411,858 - CCNA_00395 0.45 +0.5
411,894 - CCNA_00395 0.47 -1.7
411,919 + CCNA_00395 0.48 -3.7
411,919 + CCNA_00395 0.48 -3.3
411,919 + CCNA_00395 0.48 -2.8
411,928 - CCNA_00395 0.49 -1.1
411,930 + CCNA_00395 0.49 -3.9
411,937 - CCNA_00395 0.49 +0.1
411,946 + CCNA_00395 0.50 -1.9
411,964 - CCNA_00395 0.51 -3.8
412,030 + CCNA_00395 0.55 -1.8
412,035 + CCNA_00395 0.55 -1.9
412,086 - CCNA_00395 0.58 +0.5
412,089 + CCNA_00395 0.58 -3.4
412,095 + CCNA_00395 0.58 -2.0
412,097 - CCNA_00395 0.58 -0.9
412,123 + CCNA_00395 0.60 -2.6
412,149 - CCNA_00395 0.61 -2.4
412,153 + CCNA_00395 0.61 +0.9
412,153 + CCNA_00395 0.61 -2.4
412,153 + CCNA_00395 0.61 -3.1
412,161 - CCNA_00395 0.62 -0.7
412,203 + CCNA_00395 0.64 -0.5
412,208 + CCNA_00395 0.65 -1.8
412,208 + CCNA_00395 0.65 -3.6
412,218 + CCNA_00395 0.65 -1.4
412,255 + CCNA_00395 0.67 -4.5
412,258 - CCNA_00395 0.67 -1.4
412,258 - CCNA_00395 0.67 -3.0
412,258 - CCNA_00395 0.67 -3.1
412,291 + CCNA_00395 0.69 -0.7
412,297 - CCNA_00395 0.70 -1.6
412,310 + CCNA_00395 0.70 -3.5
412,320 + CCNA_00395 0.71 -0.7
412,328 - CCNA_00395 0.71 -0.5
412,333 + CCNA_00395 0.72 -4.5
412,399 - CCNA_00395 0.75 -0.7
412,411 + CCNA_00395 0.76 -0.5
412,422 - CCNA_00395 0.76 +1.1
412,460 - CCNA_00395 0.79 +0.5
412,471 - CCNA_00395 0.79 -2.2
412,533 + CCNA_00395 0.83 -1.3
412,533 + CCNA_00395 0.83 -3.3
412,533 + CCNA_00395 0.83 -1.6
412,533 + CCNA_00395 0.83 -2.6
412,533 + CCNA_00395 0.83 -1.2
412,541 - CCNA_00395 0.83 -0.7
412,546 + CCNA_00395 0.83 -2.6
412,546 + CCNA_00395 0.83 -3.6
412,556 + CCNA_00395 0.84 -1.6
412,562 + CCNA_00395 0.84 -3.2
412,588 - CCNA_00395 0.86 +0.5
412,597 + CCNA_00395 0.86 -3.3
412,599 + CCNA_00395 0.86 -3.1
412,658 - CCNA_00395 0.90 -0.2
412,662 + CCNA_00395 0.90 -0.7
412,676 - +0.7
412,676 - -1.2
412,694 + +0.5
412,709 - +0.5
412,746 + -1.4
412,746 + -2.6
412,754 - -2.8
412,836 + +0.4
412,836 + -0.3
412,859 - +0.7
412,888 - +1.1
412,895 + +0.4
412,895 + -0.9
412,895 + -0.3
412,895 + -1.0
412,900 + -0.1
412,900 + -0.2
412,903 - +0.4
412,903 - +0.1
412,956 - -0.6
413,001 + CCNA_00396 0.10 -1.9
413,011 + CCNA_00396 0.12 +2.1
413,035 - CCNA_00396 0.15 -0.9
413,037 - CCNA_00396 0.15 +0.1
413,037 - CCNA_00396 0.15 -2.3
413,040 + CCNA_00396 0.16 +0.8
413,055 - CCNA_00396 0.18 -0.5
413,095 + CCNA_00396 0.24 -0.6
413,097 - CCNA_00396 0.24 +2.3
413,141 + CCNA_00396 0.31 -1.9
413,141 + CCNA_00396 0.31 -1.6
413,161 + CCNA_00396 0.34 +0.5
413,169 - CCNA_00396 0.35 -0.5
413,169 - CCNA_00396 0.35 -0.7
413,169 - CCNA_00396 0.35 +0.3
413,186 + CCNA_00396 0.37 -0.6
413,186 + CCNA_00396 0.37 -1.9
413,195 + CCNA_00396 0.39 +0.1
413,203 - CCNA_00396 0.40 +0.1
413,203 - CCNA_00396 0.40 +0.0
413,208 - CCNA_00396 0.41 -1.2
413,212 - CCNA_00396 0.41 +0.6
413,244 - CCNA_00396 0.46 +1.1
413,289 + CCNA_00396 0.53 +0.5
413,292 + CCNA_00396 0.53 -1.1
413,297 + CCNA_00396 0.54 +1.3
413,297 + CCNA_00396 0.54 +1.1
413,305 - CCNA_00396 0.55 -0.2
413,313 + CCNA_00396 0.56 +2.1
413,321 - CCNA_00396 0.57 -0.7
413,321 - CCNA_00396 0.57 -0.9
413,410 - CCNA_00396 0.70 +0.1
413,412 - CCNA_00396 0.71 +0.6
413,435 - CCNA_00396 0.74 -0.1
413,465 - CCNA_00396 0.78 +0.2
413,494 + CCNA_00396 0.83 +1.4
413,524 + CCNA_00396 0.87 +2.4
413,537 - CCNA_00396 0.89 +0.6
413,546 + +1.6
413,669 + +0.1
413,693 - -0.7
413,726 + +1.3
413,825 - -0.5
413,837 + -1.5
413,837 + -1.2
413,837 + -5.3
413,837 + -2.7
413,837 + -3.7

Or see this region's nucleotide sequence