Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00337

Experiment: PYE_noCalcium 25C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00336 and CCNA_00337 are separated by 77 nucleotidesCCNA_00337 and CCNA_00338 are separated by 173 nucleotides CCNA_00336: CCNA_00336 - lignostilbene-alpha,beta-dioxygenase, at 346,066 to 347,517 _00336 CCNA_00337: CCNA_00337 - TetR-family transcriptional regulator, at 347,595 to 348,305 _00337 CCNA_00338: CCNA_00338 - TonB-dependent receptor, at 348,479 to 350,719 _00338 Position (kb) 347 348 349Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 346.597 kb on - strand, within CCNA_00336at 346.597 kb on - strand, within CCNA_00336at 346.597 kb on - strand, within CCNA_00336at 346.611 kb on + strand, within CCNA_00336at 346.611 kb on + strand, within CCNA_00336at 346.612 kb on - strand, within CCNA_00336at 346.612 kb on - strand, within CCNA_00336at 346.619 kb on - strand, within CCNA_00336at 346.691 kb on + strand, within CCNA_00336at 346.698 kb on + strand, within CCNA_00336at 346.706 kb on - strand, within CCNA_00336at 346.707 kb on - strand, within CCNA_00336at 346.718 kb on + strand, within CCNA_00336at 346.721 kb on - strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.728 kb on + strand, within CCNA_00336at 346.733 kb on + strand, within CCNA_00336at 346.735 kb on + strand, within CCNA_00336at 346.736 kb on - strand, within CCNA_00336at 346.736 kb on - strand, within CCNA_00336at 346.742 kb on - strand, within CCNA_00336at 346.743 kb on - strand, within CCNA_00336at 346.749 kb on - strand, within CCNA_00336at 346.753 kb on - strand, within CCNA_00336at 346.753 kb on - strand, within CCNA_00336at 346.776 kb on - strand, within CCNA_00336at 346.796 kb on + strand, within CCNA_00336at 346.796 kb on + strand, within CCNA_00336at 346.800 kb on + strand, within CCNA_00336at 346.804 kb on - strand, within CCNA_00336at 346.810 kb on + strand, within CCNA_00336at 346.815 kb on + strand, within CCNA_00336at 346.818 kb on - strand, within CCNA_00336at 346.818 kb on - strand, within CCNA_00336at 346.823 kb on - strand, within CCNA_00336at 346.831 kb on + strand, within CCNA_00336at 346.831 kb on + strand, within CCNA_00336at 346.831 kb on + strand, within CCNA_00336at 346.839 kb on - strand, within CCNA_00336at 346.839 kb on - strand, within CCNA_00336at 346.839 kb on - strand, within CCNA_00336at 346.840 kb on - strand, within CCNA_00336at 346.868 kb on + strand, within CCNA_00336at 346.880 kb on + strand, within CCNA_00336at 346.978 kb on - strand, within CCNA_00336at 346.982 kb on - strand, within CCNA_00336at 347.070 kb on + strand, within CCNA_00336at 347.070 kb on + strand, within CCNA_00336at 347.093 kb on + strand, within CCNA_00336at 347.099 kb on + strand, within CCNA_00336at 347.103 kb on - strand, within CCNA_00336at 347.107 kb on - strand, within CCNA_00336at 347.114 kb on + strand, within CCNA_00336at 347.186 kb on + strand, within CCNA_00336at 347.196 kb on + strand, within CCNA_00336at 347.196 kb on + strand, within CCNA_00336at 347.213 kb on + strand, within CCNA_00336at 347.257 kb on + strand, within CCNA_00336at 347.283 kb on - strand, within CCNA_00336at 347.326 kb on + strand, within CCNA_00336at 347.326 kb on - strand, within CCNA_00336at 347.356 kb on + strand, within CCNA_00336at 347.369 kb on + strand, within CCNA_00336at 347.376 kb on + strandat 347.384 kb on + strandat 347.385 kb on + strandat 347.398 kb on - strandat 347.428 kb on - strandat 347.428 kb on - strandat 347.428 kb on - strandat 347.435 kb on + strandat 347.451 kb on + strandat 347.508 kb on - strandat 347.560 kb on - strandat 347.648 kb on + strandat 347.655 kb on + strandat 347.656 kb on + strandat 347.656 kb on + strandat 347.666 kb on + strand, within CCNA_00337at 347.695 kb on - strand, within CCNA_00337at 347.697 kb on - strand, within CCNA_00337at 347.707 kb on - strand, within CCNA_00337at 347.762 kb on - strand, within CCNA_00337at 347.766 kb on + strand, within CCNA_00337at 347.766 kb on + strand, within CCNA_00337at 347.767 kb on + strand, within CCNA_00337at 347.767 kb on + strand, within CCNA_00337at 347.774 kb on - strand, within CCNA_00337at 347.794 kb on + strand, within CCNA_00337at 347.802 kb on - strandat 347.804 kb on + strand, within CCNA_00337at 347.804 kb on + strand, within CCNA_00337at 347.804 kb on + strand, within CCNA_00337at 347.804 kb on + strand, within CCNA_00337at 347.812 kb on - strand, within CCNA_00337at 347.812 kb on - strand, within CCNA_00337at 347.884 kb on + strand, within CCNA_00337at 347.916 kb on - strand, within CCNA_00337at 347.919 kb on + strand, within CCNA_00337at 347.939 kb on + strand, within CCNA_00337at 347.944 kb on - strand, within CCNA_00337at 347.996 kb on + strand, within CCNA_00337at 347.996 kb on + strand, within CCNA_00337at 348.005 kb on - strand, within CCNA_00337at 348.012 kb on + strand, within CCNA_00337at 348.020 kb on - strand, within CCNA_00337at 348.020 kb on - strand, within CCNA_00337at 348.029 kb on - strand, within CCNA_00337at 348.035 kb on - strand, within CCNA_00337at 348.063 kb on - strand, within CCNA_00337at 348.074 kb on + strand, within CCNA_00337at 348.074 kb on + strand, within CCNA_00337at 348.074 kb on + strand, within CCNA_00337at 348.082 kb on - strand, within CCNA_00337at 348.082 kb on - strand, within CCNA_00337at 348.082 kb on - strand, within CCNA_00337at 348.082 kb on - strand, within CCNA_00337at 348.089 kb on + strand, within CCNA_00337at 348.096 kb on - strand, within CCNA_00337at 348.113 kb on + strand, within CCNA_00337at 348.121 kb on - strand, within CCNA_00337at 348.121 kb on - strand, within CCNA_00337at 348.126 kb on - strand, within CCNA_00337at 348.126 kb on - strand, within CCNA_00337at 348.147 kb on + strand, within CCNA_00337at 348.147 kb on + strand, within CCNA_00337at 348.148 kb on + strand, within CCNA_00337at 348.156 kb on - strand, within CCNA_00337at 348.185 kb on + strand, within CCNA_00337at 348.281 kb on + strandat 348.281 kb on + strandat 348.284 kb on - strandat 348.288 kb on + strandat 348.299 kb on + strandat 348.411 kb on + strandat 348.452 kb on + strandat 348.459 kb on + strandat 348.459 kb on + strandat 348.459 kb on + strandat 348.459 kb on + strandat 348.459 kb on + strandat 348.459 kb on + strandat 348.467 kb on - strandat 348.498 kb on - strandat 348.503 kb on + strandat 348.518 kb on + strandat 348.518 kb on + strandat 348.518 kb on + strandat 348.523 kb on + strandat 348.523 kb on + strandat 348.551 kb on - strandat 348.556 kb on + strandat 348.564 kb on - strandat 348.591 kb on + strandat 348.647 kb on + strandat 348.647 kb on + strandat 348.666 kb on + strandat 348.668 kb on + strandat 348.687 kb on + strandat 348.699 kb on - strandat 348.704 kb on - strand, within CCNA_00338at 348.716 kb on + strand, within CCNA_00338at 348.716 kb on + strand, within CCNA_00338at 348.716 kb on + strand, within CCNA_00338at 348.724 kb on - strand, within CCNA_00338at 348.729 kb on - strand, within CCNA_00338at 348.731 kb on + strand, within CCNA_00338at 348.739 kb on - strand, within CCNA_00338at 348.739 kb on - strand, within CCNA_00338at 348.758 kb on + strand, within CCNA_00338at 348.768 kb on + strand, within CCNA_00338at 348.768 kb on + strand, within CCNA_00338at 348.768 kb on + strand, within CCNA_00338at 348.788 kb on - strand, within CCNA_00338at 348.793 kb on - strand, within CCNA_00338at 348.807 kb on + strand, within CCNA_00338at 348.807 kb on + strand, within CCNA_00338at 348.815 kb on - strand, within CCNA_00338at 348.849 kb on - strand, within CCNA_00338at 348.849 kb on - strand, within CCNA_00338at 348.850 kb on - strand, within CCNA_00338at 348.850 kb on - strand, within CCNA_00338at 348.850 kb on - strand, within CCNA_00338at 348.869 kb on + strand, within CCNA_00338at 348.869 kb on + strand, within CCNA_00338at 348.869 kb on + strandat 348.869 kb on + strand, within CCNA_00338at 348.877 kb on - strand, within CCNA_00338at 348.877 kb on - strand, within CCNA_00338at 348.880 kb on + strand, within CCNA_00338at 348.897 kb on + strand, within CCNA_00338at 348.905 kb on - strand, within CCNA_00338at 349.020 kb on + strand, within CCNA_00338at 349.033 kb on - strand, within CCNA_00338at 349.049 kb on + strand, within CCNA_00338at 349.049 kb on + strand, within CCNA_00338at 349.062 kb on - strand, within CCNA_00338at 349.065 kb on + strand, within CCNA_00338at 349.097 kb on - strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.099 kb on + strand, within CCNA_00338at 349.107 kb on - strand, within CCNA_00338at 349.121 kb on - strand, within CCNA_00338at 349.124 kb on + strand, within CCNA_00338at 349.126 kb on + strand, within CCNA_00338at 349.132 kb on - strand, within CCNA_00338at 349.142 kb on + strand, within CCNA_00338at 349.159 kb on + strand, within CCNA_00338at 349.165 kb on + strand, within CCNA_00338at 349.167 kb on - strand, within CCNA_00338at 349.167 kb on - strand, within CCNA_00338at 349.205 kb on + strand, within CCNA_00338at 349.227 kb on - strand, within CCNA_00338at 349.228 kb on - strand, within CCNA_00338at 349.232 kb on - strand, within CCNA_00338at 349.232 kb on - strand, within CCNA_00338at 349.242 kb on + strand, within CCNA_00338at 349.250 kb on - strand, within CCNA_00338at 349.263 kb on + strand, within CCNA_00338at 349.271 kb on + strand, within CCNA_00338at 349.271 kb on + strand, within CCNA_00338at 349.277 kb on + strand, within CCNA_00338at 349.279 kb on - strand, within CCNA_00338at 349.279 kb on - strand, within CCNA_00338at 349.298 kb on + strand, within CCNA_00338at 349.298 kb on + strand, within CCNA_00338at 349.298 kb on + strand, within CCNA_00338at 349.298 kb on + strand, within CCNA_00338

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days
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346,597 - CCNA_00336 0.37 +0.0
346,597 - CCNA_00336 0.37 +0.0
346,597 - CCNA_00336 0.37 -0.3
346,611 + CCNA_00336 0.38 -0.4
346,611 + CCNA_00336 0.38 +0.5
346,612 - CCNA_00336 0.38 +1.0
346,612 - CCNA_00336 0.38 -1.0
346,619 - CCNA_00336 0.38 -1.9
346,691 + CCNA_00336 0.43 +1.5
346,698 + CCNA_00336 0.44 +0.5
346,706 - CCNA_00336 0.44 -1.9
346,707 - CCNA_00336 0.44 -0.5
346,718 + CCNA_00336 0.45 +1.0
346,721 - CCNA_00336 0.45 +0.5
346,728 + CCNA_00336 0.46 -0.5
346,728 + CCNA_00336 0.46 -0.1
346,728 + CCNA_00336 0.46 +0.5
346,728 + CCNA_00336 0.46 +0.3
346,733 + CCNA_00336 0.46 -1.1
346,735 + CCNA_00336 0.46 -1.7
346,736 - CCNA_00336 0.46 +0.2
346,736 - CCNA_00336 0.46 -0.5
346,742 - CCNA_00336 0.47 -1.3
346,743 - CCNA_00336 0.47 +0.9
346,749 - CCNA_00336 0.47 +0.2
346,753 - CCNA_00336 0.47 -1.2
346,753 - CCNA_00336 0.47 -0.2
346,776 - CCNA_00336 0.49 -1.0
346,796 + CCNA_00336 0.50 -0.3
346,796 + CCNA_00336 0.50 -1.1
346,800 + CCNA_00336 0.51 +0.7
346,804 - CCNA_00336 0.51 +1.7
346,810 + CCNA_00336 0.51 -0.8
346,815 + CCNA_00336 0.52 +0.5
346,818 - CCNA_00336 0.52 -0.3
346,818 - CCNA_00336 0.52 -0.3
346,823 - CCNA_00336 0.52 -1.3
346,831 + CCNA_00336 0.53 -0.8
346,831 + CCNA_00336 0.53 -2.5
346,831 + CCNA_00336 0.53 +0.6
346,839 - CCNA_00336 0.53 +0.1
346,839 - CCNA_00336 0.53 -0.6
346,839 - CCNA_00336 0.53 -0.5
346,840 - CCNA_00336 0.53 -1.9
346,868 + CCNA_00336 0.55 -0.5
346,880 + CCNA_00336 0.56 +0.8
346,978 - CCNA_00336 0.63 +2.0
346,982 - CCNA_00336 0.63 +0.5
347,070 + CCNA_00336 0.69 -0.1
347,070 + CCNA_00336 0.69 -1.1
347,093 + CCNA_00336 0.71 -0.7
347,099 + CCNA_00336 0.71 +0.0
347,103 - CCNA_00336 0.71 -0.8
347,107 - CCNA_00336 0.72 -2.2
347,114 + CCNA_00336 0.72 -1.1
347,186 + CCNA_00336 0.77 +0.3
347,196 + CCNA_00336 0.78 +0.2
347,196 + CCNA_00336 0.78 -0.5
347,213 + CCNA_00336 0.79 -1.8
347,257 + CCNA_00336 0.82 +0.5
347,283 - CCNA_00336 0.84 -1.9
347,326 + CCNA_00336 0.87 -0.9
347,326 - CCNA_00336 0.87 +1.0
347,356 + CCNA_00336 0.89 -1.3
347,369 + CCNA_00336 0.90 +0.7
347,376 + +1.3
347,384 + -1.5
347,385 + +0.2
347,398 - -0.8
347,428 - +0.5
347,428 - -0.8
347,428 - -1.1
347,435 + -0.8
347,451 + -1.2
347,508 - -0.8
347,560 - -0.3
347,648 + -5.7
347,655 + -3.0
347,656 + -4.9
347,656 + -3.7
347,666 + CCNA_00337 0.10 -4.4
347,695 - CCNA_00337 0.14 -0.3
347,697 - CCNA_00337 0.14 +0.0
347,707 - CCNA_00337 0.16 -4.8
347,762 - CCNA_00337 0.23 -2.2
347,766 + CCNA_00337 0.24 -3.6
347,766 + CCNA_00337 0.24 -2.7
347,767 + CCNA_00337 0.24 -2.7
347,767 + CCNA_00337 0.24 -2.6
347,774 - CCNA_00337 0.25 -2.0
347,794 + CCNA_00337 0.28 -2.7
347,802 - -0.8
347,804 + CCNA_00337 0.29 -2.8
347,804 + CCNA_00337 0.29 -1.9
347,804 + CCNA_00337 0.29 -2.8
347,804 + CCNA_00337 0.29 -4.1
347,812 - CCNA_00337 0.31 -0.3
347,812 - CCNA_00337 0.31 -1.5
347,884 + CCNA_00337 0.41 -1.9
347,916 - CCNA_00337 0.45 +0.0
347,919 + CCNA_00337 0.46 -3.9
347,939 + CCNA_00337 0.48 -2.4
347,944 - CCNA_00337 0.49 -0.5
347,996 + CCNA_00337 0.56 -2.2
347,996 + CCNA_00337 0.56 -4.0
348,005 - CCNA_00337 0.58 -0.8
348,012 + CCNA_00337 0.59 -2.1
348,020 - CCNA_00337 0.60 -3.8
348,020 - CCNA_00337 0.60 +0.0
348,029 - CCNA_00337 0.61 +0.0
348,035 - CCNA_00337 0.62 +0.5
348,063 - CCNA_00337 0.66 +0.5
348,074 + CCNA_00337 0.67 -5.7
348,074 + CCNA_00337 0.67 -2.8
348,074 + CCNA_00337 0.67 -1.7
348,082 - CCNA_00337 0.68 -3.6
348,082 - CCNA_00337 0.68 -1.3
348,082 - CCNA_00337 0.68 -2.5
348,082 - CCNA_00337 0.68 +0.5
348,089 + CCNA_00337 0.69 -3.2
348,096 - CCNA_00337 0.70 -2.3
348,113 + CCNA_00337 0.73 -5.5
348,121 - CCNA_00337 0.74 -4.5
348,121 - CCNA_00337 0.74 -2.4
348,126 - CCNA_00337 0.75 -3.8
348,126 - CCNA_00337 0.75 -2.1
348,147 + CCNA_00337 0.78 -3.4
348,147 + CCNA_00337 0.78 -3.0
348,148 + CCNA_00337 0.78 -4.8
348,156 - CCNA_00337 0.79 -3.0
348,185 + CCNA_00337 0.83 -1.0
348,281 + -1.0
348,281 + +0.0
348,284 - +0.5
348,288 + -2.5
348,299 + -1.0
348,411 + +0.0
348,452 + +0.3
348,459 + -0.7
348,459 + +0.0
348,459 + +0.7
348,459 + +1.0
348,459 + -1.1
348,459 + +0.7
348,467 - -0.5
348,498 - -1.8
348,503 + +1.0
348,518 + -0.2
348,518 + +1.3
348,518 + +0.3
348,523 + -0.4
348,523 + +0.4
348,551 - +1.0
348,556 + +0.2
348,564 - +0.9
348,591 + +0.8
348,647 + +1.1
348,647 + +0.2
348,666 + +0.1
348,668 + +1.6
348,687 + +1.4
348,699 - -0.1
348,704 - CCNA_00338 0.10 -1.3
348,716 + CCNA_00338 0.11 -0.6
348,716 + CCNA_00338 0.11 +0.5
348,716 + CCNA_00338 0.11 -0.4
348,724 - CCNA_00338 0.11 -1.7
348,729 - CCNA_00338 0.11 +1.3
348,731 + CCNA_00338 0.11 +1.6
348,739 - CCNA_00338 0.12 -1.0
348,739 - CCNA_00338 0.12 +0.0
348,758 + CCNA_00338 0.12 -0.1
348,768 + CCNA_00338 0.13 +0.0
348,768 + CCNA_00338 0.13 +0.9
348,768 + CCNA_00338 0.13 +0.4
348,788 - CCNA_00338 0.14 -1.4
348,793 - CCNA_00338 0.14 -0.8
348,807 + CCNA_00338 0.15 +0.6
348,807 + CCNA_00338 0.15 +0.7
348,815 - CCNA_00338 0.15 +0.0
348,849 - CCNA_00338 0.17 +0.2
348,849 - CCNA_00338 0.17 +0.5
348,850 - CCNA_00338 0.17 +2.0
348,850 - CCNA_00338 0.17 +0.3
348,850 - CCNA_00338 0.17 -0.8
348,869 + CCNA_00338 0.17 +0.5
348,869 + CCNA_00338 0.17 +0.2
348,869 + +1.0
348,869 + CCNA_00338 0.17 -0.2
348,877 - CCNA_00338 0.18 +1.0
348,877 - CCNA_00338 0.18 -0.8
348,880 + CCNA_00338 0.18 +0.7
348,897 + CCNA_00338 0.19 +0.5
348,905 - CCNA_00338 0.19 +2.0
349,020 + CCNA_00338 0.24 -0.3
349,033 - CCNA_00338 0.25 +0.9
349,049 + CCNA_00338 0.25 +0.6
349,049 + CCNA_00338 0.25 +0.2
349,062 - CCNA_00338 0.26 -1.7
349,065 + CCNA_00338 0.26 +0.8
349,097 - CCNA_00338 0.28 -0.5
349,099 + CCNA_00338 0.28 -1.7
349,099 + CCNA_00338 0.28 +1.8
349,099 + CCNA_00338 0.28 +0.6
349,099 + CCNA_00338 0.28 -1.4
349,099 + CCNA_00338 0.28 -0.4
349,099 + CCNA_00338 0.28 +0.9
349,099 + CCNA_00338 0.28 -1.7
349,099 + CCNA_00338 0.28 +1.7
349,107 - CCNA_00338 0.28 -1.0
349,121 - CCNA_00338 0.29 -0.4
349,124 + CCNA_00338 0.29 +0.9
349,126 + CCNA_00338 0.29 +0.6
349,132 - CCNA_00338 0.29 -2.9
349,142 + CCNA_00338 0.30 +0.4
349,159 + CCNA_00338 0.30 -0.0
349,165 + CCNA_00338 0.31 +0.5
349,167 - CCNA_00338 0.31 -0.3
349,167 - CCNA_00338 0.31 -0.7
349,205 + CCNA_00338 0.32 +0.0
349,227 - CCNA_00338 0.33 +0.2
349,228 - CCNA_00338 0.33 +1.0
349,232 - CCNA_00338 0.34 -0.8
349,232 - CCNA_00338 0.34 +1.5
349,242 + CCNA_00338 0.34 +0.5
349,250 - CCNA_00338 0.34 -1.1
349,263 + CCNA_00338 0.35 -0.8
349,271 + CCNA_00338 0.35 -0.2
349,271 + CCNA_00338 0.35 +0.1
349,277 + CCNA_00338 0.36 +0.1
349,279 - CCNA_00338 0.36 +2.0
349,279 - CCNA_00338 0.36 -0.4
349,298 + CCNA_00338 0.37 -0.5
349,298 + CCNA_00338 0.37 +0.2
349,298 + CCNA_00338 0.37 +1.3
349,298 + CCNA_00338 0.37 -0.5

Or see this region's nucleotide sequence