Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00285

Experiment: PYE_noCalcium 25C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00283 and CCNA_00284 overlap by 4 nucleotidesCCNA_00284 and CCNA_00285 overlap by 4 nucleotidesCCNA_00285 and CCNA_00286 are separated by 192 nucleotidesCCNA_00286 and CCNA_00287 are separated by 18 nucleotides CCNA_00283: CCNA_00283 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 295,109 to 295,969 _00283 CCNA_00284: CCNA_00284 - pyrimidine 5'-nucleotidase family protein, at 295,966 to 296,631 _00284 CCNA_00285: CCNA_00285 - acetylglutamate kinase, at 296,628 to 297,542 _00285 CCNA_00286: CCNA_00286 - two-component receiver domain protein LovR, at 297,735 to 298,193 _00286 CCNA_00287: CCNA_00287 - photosensory histidine protein kinase LovK, at 298,212 to 299,318 _00287 Position (kb) 296 297 298Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 295.962 kb on - strandat 296.044 kb on + strand, within CCNA_00284at 296.053 kb on - strand, within CCNA_00284at 296.068 kb on + strand, within CCNA_00284at 296.068 kb on + strand, within CCNA_00284at 296.068 kb on + strand, within CCNA_00284at 296.073 kb on + strand, within CCNA_00284at 296.073 kb on + strand, within CCNA_00284at 296.073 kb on + strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.080 kb on + strand, within CCNA_00284at 296.081 kb on - strand, within CCNA_00284at 296.081 kb on - strand, within CCNA_00284at 296.088 kb on - strand, within CCNA_00284at 296.153 kb on + strand, within CCNA_00284at 296.156 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.269 kb on + strand, within CCNA_00284at 296.346 kb on + strand, within CCNA_00284at 296.352 kb on + strand, within CCNA_00284at 296.352 kb on + strand, within CCNA_00284at 296.360 kb on - strand, within CCNA_00284at 296.360 kb on - strand, within CCNA_00284at 296.366 kb on - strand, within CCNA_00284at 296.366 kb on - strand, within CCNA_00284at 296.437 kb on + strand, within CCNA_00284at 296.445 kb on - strand, within CCNA_00284at 296.447 kb on + strand, within CCNA_00284at 296.449 kb on + strand, within CCNA_00284at 296.449 kb on + strand, within CCNA_00284at 296.450 kb on - strand, within CCNA_00284at 296.450 kb on - strand, within CCNA_00284at 296.455 kb on - strand, within CCNA_00284at 296.455 kb on - strand, within CCNA_00284at 296.619 kb on + strandat 296.620 kb on - strandat 296.620 kb on - strandat 297.617 kb on + strandat 297.619 kb on + strandat 297.635 kb on - strandat 297.682 kb on - strandat 297.746 kb on - strandat 297.765 kb on - strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.779 kb on + strandat 297.806 kb on + strand, within CCNA_00286at 297.846 kb on + strandat 297.854 kb on - strand, within CCNA_00286at 297.854 kb on - strand, within CCNA_00286at 297.869 kb on + strand, within CCNA_00286at 297.874 kb on + strand, within CCNA_00286at 297.877 kb on - strand, within CCNA_00286at 297.877 kb on - strand, within CCNA_00286at 297.882 kb on - strand, within CCNA_00286at 297.882 kb on - strand, within CCNA_00286at 297.893 kb on + strand, within CCNA_00286at 297.914 kb on - strand, within CCNA_00286at 297.927 kb on - strand, within CCNA_00286at 297.933 kb on - strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.961 kb on + strand, within CCNA_00286at 297.984 kb on + strand, within CCNA_00286at 297.992 kb on - strand, within CCNA_00286at 297.997 kb on + strand, within CCNA_00286at 297.997 kb on - strand, within CCNA_00286at 297.999 kb on + strand, within CCNA_00286at 298.045 kb on - strand, within CCNA_00286at 298.081 kb on - strand, within CCNA_00286at 298.114 kb on + strand, within CCNA_00286at 298.119 kb on + strand, within CCNA_00286at 298.188 kb on + strandat 298.222 kb on + strandat 298.259 kb on - strandat 298.292 kb on + strandat 298.345 kb on + strand, within CCNA_00287at 298.353 kb on - strand, within CCNA_00287at 298.353 kb on - strand, within CCNA_00287at 298.355 kb on + strand, within CCNA_00287at 298.358 kb on - strand, within CCNA_00287at 298.358 kb on - strand, within CCNA_00287at 298.395 kb on + strand, within CCNA_00287at 298.459 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.495 kb on + strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.538 kb on + strand, within CCNA_00287

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days
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295,962 - -1.4
296,044 + CCNA_00284 0.12 -1.0
296,053 - CCNA_00284 0.13 -0.1
296,068 + CCNA_00284 0.15 -4.3
296,068 + CCNA_00284 0.15 +2.4
296,068 + CCNA_00284 0.15 +0.0
296,073 + CCNA_00284 0.16 -1.3
296,073 + CCNA_00284 0.16 -1.0
296,073 + CCNA_00284 0.16 -0.2
296,076 - CCNA_00284 0.17 -0.8
296,076 - CCNA_00284 0.17 -0.3
296,076 - CCNA_00284 0.17 -0.3
296,076 - CCNA_00284 0.17 +0.7
296,076 - CCNA_00284 0.17 +1.1
296,076 - CCNA_00284 0.17 +0.7
296,080 + CCNA_00284 0.17 -0.3
296,081 - CCNA_00284 0.17 -0.6
296,081 - CCNA_00284 0.17 +0.6
296,088 - CCNA_00284 0.18 -0.9
296,153 + CCNA_00284 0.28 -1.0
296,156 - CCNA_00284 0.29 -0.1
296,183 - CCNA_00284 0.33 +0.3
296,183 - CCNA_00284 0.33 +0.1
296,183 - CCNA_00284 0.33 +0.9
296,183 - CCNA_00284 0.33 -0.0
296,269 + CCNA_00284 0.45 -2.1
296,346 + CCNA_00284 0.57 -1.0
296,352 + CCNA_00284 0.58 -2.5
296,352 + CCNA_00284 0.58 -0.0
296,360 - CCNA_00284 0.59 -0.4
296,360 - CCNA_00284 0.59 -0.4
296,366 - CCNA_00284 0.60 +0.3
296,366 - CCNA_00284 0.60 +0.0
296,437 + CCNA_00284 0.71 -3.0
296,445 - CCNA_00284 0.72 -1.0
296,447 + CCNA_00284 0.72 -0.3
296,449 + CCNA_00284 0.73 -1.1
296,449 + CCNA_00284 0.73 +0.2
296,450 - CCNA_00284 0.73 -0.0
296,450 - CCNA_00284 0.73 -0.3
296,455 - CCNA_00284 0.73 -0.4
296,455 - CCNA_00284 0.73 +0.7
296,619 + -1.2
296,620 - -0.1
296,620 - -0.3
297,617 + +1.0
297,619 + -0.2
297,635 - +0.1
297,682 - +0.3
297,746 - +1.7
297,765 - +0.7
297,769 + -1.3
297,769 + -0.3
297,769 + -2.5
297,769 + +1.8
297,769 + -0.5
297,769 + +4.0
297,769 + +1.7
297,777 - +2.3
297,777 - +1.2
297,777 - +1.5
297,777 - +0.3
297,777 - +1.6
297,777 - +0.8
297,779 + -0.3
297,806 + CCNA_00286 0.15 +0.5
297,846 + +1.0
297,854 - CCNA_00286 0.26 +0.9
297,854 - CCNA_00286 0.26 +0.7
297,869 + CCNA_00286 0.29 +0.8
297,874 + CCNA_00286 0.30 +0.0
297,877 - CCNA_00286 0.31 +1.7
297,877 - CCNA_00286 0.31 +1.0
297,882 - CCNA_00286 0.32 +0.1
297,882 - CCNA_00286 0.32 +0.7
297,893 + CCNA_00286 0.34 +1.8
297,914 - CCNA_00286 0.39 +1.2
297,927 - CCNA_00286 0.42 +0.9
297,933 - CCNA_00286 0.43 +0.1
297,940 + CCNA_00286 0.45 +1.6
297,940 + CCNA_00286 0.45 +1.8
297,940 + CCNA_00286 0.45 +1.9
297,940 + CCNA_00286 0.45 +2.0
297,940 + CCNA_00286 0.45 +1.6
297,940 + CCNA_00286 0.45 +1.9
297,940 + CCNA_00286 0.45 +1.0
297,948 - CCNA_00286 0.46 +2.3
297,948 - CCNA_00286 0.46 -0.1
297,948 - CCNA_00286 0.46 +0.9
297,948 - CCNA_00286 0.46 +0.5
297,948 - CCNA_00286 0.46 +0.9
297,948 - CCNA_00286 0.46 +0.7
297,948 - CCNA_00286 0.46 +0.6
297,948 - CCNA_00286 0.46 +0.6
297,961 + CCNA_00286 0.49 +0.5
297,984 + CCNA_00286 0.54 -0.1
297,992 - CCNA_00286 0.56 +1.5
297,997 + CCNA_00286 0.57 +0.0
297,997 - CCNA_00286 0.57 +0.9
297,999 + CCNA_00286 0.58 -0.3
298,045 - CCNA_00286 0.68 +0.7
298,081 - CCNA_00286 0.75 +1.4
298,114 + CCNA_00286 0.83 -1.0
298,119 + CCNA_00286 0.84 +0.2
298,188 + +0.1
298,222 + +2.2
298,259 - +1.2
298,292 + +0.1
298,345 + CCNA_00287 0.12 +0.8
298,353 - CCNA_00287 0.13 +1.6
298,353 - CCNA_00287 0.13 +1.1
298,355 + CCNA_00287 0.13 +0.7
298,358 - CCNA_00287 0.13 +1.1
298,358 - CCNA_00287 0.13 +1.6
298,395 + CCNA_00287 0.17 +1.1
298,459 + CCNA_00287 0.22 +1.2
298,488 + CCNA_00287 0.25 +0.8
298,488 + CCNA_00287 0.25 +2.3
298,488 + CCNA_00287 0.25 +0.2
298,488 + CCNA_00287 0.25 +1.1
298,488 + CCNA_00287 0.25 +0.4
298,488 + CCNA_00287 0.25 +1.0
298,488 + CCNA_00287 0.25 +1.2
298,495 + CCNA_00287 0.26 +0.5
298,496 - CCNA_00287 0.26 +0.4
298,496 - CCNA_00287 0.26 +1.3
298,496 - CCNA_00287 0.26 +1.5
298,538 + CCNA_00287 0.29 +1.7

Or see this region's nucleotide sequence