Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00011

Experiment: PYE_noCalcium 25C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00010 and CCNA_00011 are separated by 162 nucleotidesCCNA_00011 and CCNA_00012 are separated by 86 nucleotides CCNA_00010: CCNA_00010 - chaperone protein DnaK, at 8,165 to 10,060 _00010 CCNA_00011: CCNA_00011 - chaperone protein DnaJ, at 10,223 to 11,380 _00011 CCNA_00012: CCNA_00012 - DNA mismatch repair protein MutS, at 11,467 to 14,178 _00012 Position (kb) 10 11 12Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 9.904 kb on + strandat 9.928 kb on + strandat 10.006 kb on - strandat 10.054 kb on + strandat 10.115 kb on + strandat 10.145 kb on + strandat 10.152 kb on + strandat 10.157 kb on + strandat 10.759 kb on - strand, within CCNA_00011at 10.963 kb on + strand, within CCNA_00011at 11.012 kb on + strand, within CCNA_00011at 11.057 kb on + strand, within CCNA_00011at 11.096 kb on + strand, within CCNA_00011at 11.155 kb on + strand, within CCNA_00011at 11.184 kb on - strand, within CCNA_00011at 11.190 kb on - strand, within CCNA_00011at 11.247 kb on + strand, within CCNA_00011at 11.273 kb on + strandat 11.317 kb on + strandat 11.317 kb on - strandat 11.325 kb on - strandat 11.344 kb on + strandat 11.361 kb on - strandat 11.366 kb on + strandat 11.372 kb on - strandat 11.382 kb on - strandat 11.383 kb on - strandat 11.446 kb on + strandat 11.497 kb on - strandat 11.646 kb on - strandat 11.716 kb on + strandat 11.751 kb on + strand, within CCNA_00012at 11.775 kb on + strand, within CCNA_00012at 11.807 kb on + strand, within CCNA_00012at 11.807 kb on + strand, within CCNA_00012at 11.813 kb on + strand, within CCNA_00012at 11.815 kb on - strand, within CCNA_00012at 11.934 kb on - strand, within CCNA_00012at 11.955 kb on + strand, within CCNA_00012at 11.967 kb on + strand, within CCNA_00012at 11.976 kb on - strand, within CCNA_00012at 11.991 kb on + strand, within CCNA_00012at 11.999 kb on - strand, within CCNA_00012at 12.002 kb on + strand, within CCNA_00012at 12.024 kb on - strand, within CCNA_00012at 12.027 kb on + strand, within CCNA_00012at 12.029 kb on + strand, within CCNA_00012at 12.035 kb on - strand, within CCNA_00012at 12.081 kb on - strand, within CCNA_00012at 12.082 kb on + strand, within CCNA_00012at 12.082 kb on + strand, within CCNA_00012at 12.098 kb on + strand, within CCNA_00012at 12.098 kb on + strand, within CCNA_00012at 12.098 kb on + strand, within CCNA_00012at 12.108 kb on + strand, within CCNA_00012at 12.111 kb on - strand, within CCNA_00012at 12.116 kb on - strand, within CCNA_00012at 12.116 kb on - strand, within CCNA_00012at 12.116 kb on - strand, within CCNA_00012at 12.116 kb on - strand, within CCNA_00012at 12.121 kb on + strand, within CCNA_00012at 12.123 kb on - strand, within CCNA_00012at 12.126 kb on + strand, within CCNA_00012at 12.134 kb on - strand, within CCNA_00012at 12.150 kb on - strand, within CCNA_00012at 12.162 kb on + strand, within CCNA_00012at 12.170 kb on - strand, within CCNA_00012at 12.170 kb on - strand, within CCNA_00012at 12.172 kb on + strand, within CCNA_00012at 12.172 kb on + strand, within CCNA_00012at 12.178 kb on + strand, within CCNA_00012at 12.205 kb on - strand, within CCNA_00012at 12.221 kb on + strand, within CCNA_00012at 12.316 kb on - strand, within CCNA_00012at 12.349 kb on - strand, within CCNA_00012

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep3 12 days
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9,904 + -1.5
9,928 + -0.6
10,006 - -1.5
10,054 + +1.4
10,115 + +1.1
10,145 + -0.6
10,152 + +0.7
10,157 + +1.0
10,759 - CCNA_00011 0.46 -2.1
10,963 + CCNA_00011 0.64 -4.4
11,012 + CCNA_00011 0.68 -3.2
11,057 + CCNA_00011 0.72 -3.2
11,096 + CCNA_00011 0.75 -5.0
11,155 + CCNA_00011 0.80 -4.0
11,184 - CCNA_00011 0.83 -1.3
11,190 - CCNA_00011 0.84 +2.1
11,247 + CCNA_00011 0.88 -5.5
11,273 + -5.1
11,317 + -1.8
11,317 - -1.7
11,325 - -3.7
11,344 + -1.5
11,361 - +0.2
11,366 + +1.0
11,372 - -0.6
11,382 - -0.5
11,383 - -0.3
11,446 + -0.1
11,497 - +0.3
11,646 - -0.8
11,716 + +0.5
11,751 + CCNA_00012 0.10 +0.8
11,775 + CCNA_00012 0.11 +0.7
11,807 + CCNA_00012 0.13 +1.0
11,807 + CCNA_00012 0.13 +0.8
11,813 + CCNA_00012 0.13 +0.3
11,815 - CCNA_00012 0.13 +1.3
11,934 - CCNA_00012 0.17 +0.6
11,955 + CCNA_00012 0.18 +1.8
11,967 + CCNA_00012 0.18 +0.7
11,976 - CCNA_00012 0.19 +1.0
11,991 + CCNA_00012 0.19 +0.9
11,999 - CCNA_00012 0.20 +0.1
12,002 + CCNA_00012 0.20 +1.1
12,024 - CCNA_00012 0.21 +1.4
12,027 + CCNA_00012 0.21 +0.8
12,029 + CCNA_00012 0.21 +1.1
12,035 - CCNA_00012 0.21 +0.6
12,081 - CCNA_00012 0.23 +0.8
12,082 + CCNA_00012 0.23 +0.9
12,082 + CCNA_00012 0.23 +0.8
12,098 + CCNA_00012 0.23 +0.7
12,098 + CCNA_00012 0.23 +0.5
12,098 + CCNA_00012 0.23 +0.7
12,108 + CCNA_00012 0.24 +0.7
12,111 - CCNA_00012 0.24 -0.2
12,116 - CCNA_00012 0.24 +0.1
12,116 - CCNA_00012 0.24 +0.4
12,116 - CCNA_00012 0.24 +1.2
12,116 - CCNA_00012 0.24 +0.3
12,121 + CCNA_00012 0.24 -0.0
12,123 - CCNA_00012 0.24 -0.3
12,126 + CCNA_00012 0.24 +1.1
12,134 - CCNA_00012 0.25 -0.6
12,150 - CCNA_00012 0.25 -0.5
12,162 + CCNA_00012 0.26 +0.9
12,170 - CCNA_00012 0.26 +0.6
12,170 - CCNA_00012 0.26 +1.0
12,172 + CCNA_00012 0.26 +1.5
12,172 + CCNA_00012 0.26 +1.2
12,178 + CCNA_00012 0.26 +0.7
12,205 - CCNA_00012 0.27 -1.5
12,221 + CCNA_00012 0.28 +0.7
12,316 - CCNA_00012 0.31 +0.5
12,349 - CCNA_00012 0.33 +0.5

Or see this region's nucleotide sequence