Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13930

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13925 and BWI76_RS13930 are separated by 265 nucleotidesBWI76_RS13930 and BWI76_RS13935 are separated by 99 nucleotidesBWI76_RS13935 and BWI76_RS13940 are separated by 9 nucleotides BWI76_RS13925: BWI76_RS13925 - catalase/peroxidase HPI, at 2,907,165 to 2,909,348 _RS13925 BWI76_RS13930: BWI76_RS13930 - putative LysR-family transcriptional regulator, at 2,909,614 to 2,910,546 _RS13930 BWI76_RS13935: BWI76_RS13935 - hypothetical protein, at 2,910,646 to 2,911,080 _RS13935 BWI76_RS13940: BWI76_RS13940 - membrane protein, at 2,911,090 to 2,911,554 _RS13940 Position (kb) 2909 2910 2911Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2908.644 kb on - strand, within BWI76_RS13925at 2908.663 kb on + strand, within BWI76_RS13925at 2909.003 kb on + strand, within BWI76_RS13925at 2909.021 kb on - strandat 2909.081 kb on + strand, within BWI76_RS13925at 2909.526 kb on + strandat 2909.557 kb on - strandat 2909.626 kb on + strandat 2909.626 kb on + strandat 2909.634 kb on - strandat 2909.962 kb on - strand, within BWI76_RS13930at 2910.272 kb on - strand, within BWI76_RS13930at 2910.417 kb on + strand, within BWI76_RS13930at 2910.425 kb on - strand, within BWI76_RS13930at 2910.425 kb on - strand, within BWI76_RS13930at 2910.687 kb on + strandat 2910.840 kb on + strand, within BWI76_RS13935at 2911.090 kb on - strandat 2911.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,908,644 - BWI76_RS13925 0.68 +1.6
2,908,663 + BWI76_RS13925 0.69 -1.3
2,909,003 + BWI76_RS13925 0.84 -0.2
2,909,021 - -0.3
2,909,081 + BWI76_RS13925 0.88 +0.4
2,909,526 + +0.1
2,909,557 - -2.6
2,909,626 + -1.3
2,909,626 + -0.3
2,909,634 - -2.4
2,909,962 - BWI76_RS13930 0.37 -0.6
2,910,272 - BWI76_RS13930 0.71 +3.1
2,910,417 + BWI76_RS13930 0.86 +1.5
2,910,425 - BWI76_RS13930 0.87 +0.6
2,910,425 - BWI76_RS13930 0.87 +1.2
2,910,687 + -2.2
2,910,840 + BWI76_RS13935 0.45 +1.7
2,911,090 - -0.9
2,911,132 - -1.5

Or see this region's nucleotide sequence