Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3201

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3199 and DvMF_3200 are separated by 54 nucleotidesDvMF_3200 and DvMF_3201 are separated by 106 nucleotidesDvMF_3201 and ruvC are separated by 268 nucleotides DvMF_3199: DvMF_3199 - hypothetical protein (RefSeq), at 4,030,654 to 4,032,516 _3199 DvMF_3200: DvMF_3200 - ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq), at 4,032,571 to 4,033,176 _3200 DvMF_3201: DvMF_3201 - hypothetical protein (RefSeq), at 4,033,283 to 4,034,026 _3201 DvMF_3202: ruvC - Holliday junction resolvase (RefSeq), at 4,034,295 to 4,034,888 ruvC Position (kb) 4033 4034 4035Strain fitness (log2 ratio) -1 0 1at 4032.334 kb on - strandat 4032.511 kb on + strandat 4032.568 kb on - strandat 4032.570 kb on + strandat 4032.842 kb on + strand, within DvMF_3200at 4032.937 kb on + strand, within DvMF_3200at 4033.002 kb on + strand, within DvMF_3200at 4033.401 kb on - strand, within DvMF_3201at 4033.855 kb on + strand, within DvMF_3201at 4033.876 kb on + strand, within DvMF_3201at 4034.004 kb on - strandat 4034.484 kb on - strand, within ruvCat 4034.509 kb on - strand, within ruvCat 4034.691 kb on - strand, within ruvCat 4034.772 kb on - strand, within ruvCat 4034.921 kb on + strandat 4034.929 kb on - strandat 4034.995 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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4,032,334 - +1.3
4,032,511 + +0.7
4,032,568 - +0.5
4,032,570 + +0.9
4,032,842 + DvMF_3200 0.45 +0.7
4,032,937 + DvMF_3200 0.60 +0.9
4,033,002 + DvMF_3200 0.71 +0.9
4,033,401 - DvMF_3201 0.16 -1.5
4,033,855 + DvMF_3201 0.77 -1.6
4,033,876 + DvMF_3201 0.80 +0.7
4,034,004 - +0.3
4,034,484 - ruvC DvMF_3202 0.32 -1.3
4,034,509 - ruvC DvMF_3202 0.36 -0.9
4,034,691 - ruvC DvMF_3202 0.67 -0.8
4,034,772 - ruvC DvMF_3202 0.80 -1.6
4,034,921 + +0.8
4,034,929 - +1.1
4,034,995 + +1.5

Or see this region's nucleotide sequence