Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2986

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2985 and DvMF_2986 are separated by 310 nucleotidesDvMF_2986 and DvMF_2987 are separated by 207 nucleotidesDvMF_2987 and DvMF_2988 are separated by 360 nucleotides DvMF_2985: DvMF_2985 - Radical SAM domain protein (RefSeq), at 3,759,533 to 3,761,848 _2985 DvMF_2986: DvMF_2986 - multi-sensor hybrid histidine kinase (RefSeq), at 3,762,159 to 3,765,845 _2986 DvMF_2987: DvMF_2987 - EF hand domain-containing protein (RefSeq), at 3,766,053 to 3,766,406 _2987 DvMF_2988: DvMF_2988 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 3,766,767 to 3,768,821 _2988 Position (kb) 3762 3763 3764 3765 3766Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3761.259 kb on + strand, within DvMF_2985at 3761.283 kb on + strand, within DvMF_2985at 3761.765 kb on + strandat 3761.774 kb on + strandat 3761.782 kb on - strandat 3762.123 kb on - strandat 3762.186 kb on + strandat 3762.194 kb on - strandat 3762.338 kb on + strandat 3762.348 kb on + strandat 3762.398 kb on - strandat 3762.398 kb on - strandat 3762.507 kb on - strandat 3762.682 kb on - strand, within DvMF_2986at 3762.719 kb on + strand, within DvMF_2986at 3762.719 kb on - strand, within DvMF_2986at 3762.777 kb on - strand, within DvMF_2986at 3762.895 kb on + strand, within DvMF_2986at 3762.904 kb on + strand, within DvMF_2986at 3763.128 kb on - strand, within DvMF_2986at 3763.136 kb on + strand, within DvMF_2986at 3763.149 kb on - strand, within DvMF_2986at 3763.267 kb on - strand, within DvMF_2986at 3763.417 kb on + strand, within DvMF_2986at 3763.477 kb on - strand, within DvMF_2986at 3763.786 kb on + strand, within DvMF_2986at 3763.849 kb on - strand, within DvMF_2986at 3763.862 kb on + strand, within DvMF_2986at 3764.013 kb on - strand, within DvMF_2986at 3764.088 kb on + strand, within DvMF_2986at 3764.359 kb on + strand, within DvMF_2986at 3764.474 kb on - strand, within DvMF_2986at 3764.613 kb on - strand, within DvMF_2986at 3764.663 kb on + strand, within DvMF_2986at 3764.793 kb on - strand, within DvMF_2986at 3765.042 kb on - strand, within DvMF_2986at 3765.123 kb on - strand, within DvMF_2986at 3765.160 kb on + strand, within DvMF_2986at 3765.164 kb on - strand, within DvMF_2986at 3765.227 kb on + strand, within DvMF_2986at 3765.258 kb on - strand, within DvMF_2986at 3765.311 kb on + strand, within DvMF_2986at 3765.361 kb on + strand, within DvMF_2986at 3765.482 kb on + strandat 3765.582 kb on - strandat 3765.659 kb on - strandat 3765.713 kb on - strandat 3765.885 kb on - strandat 3766.055 kb on + strandat 3766.063 kb on - strandat 3766.087 kb on - strandat 3766.104 kb on - strand, within DvMF_2987at 3766.374 kb on - strandat 3766.508 kb on + strandat 3766.516 kb on - strandat 3766.545 kb on - strandat 3766.555 kb on - strandat 3766.685 kb on + strandat 3766.782 kb on - strandat 3766.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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3,761,259 + DvMF_2985 0.75 +0.4
3,761,283 + DvMF_2985 0.76 +0.9
3,761,765 + +0.8
3,761,774 + +0.5
3,761,782 - +0.6
3,762,123 - +0.6
3,762,186 + -0.8
3,762,194 - -0.2
3,762,338 + +0.9
3,762,348 + +0.1
3,762,398 - -1.2
3,762,398 - -0.9
3,762,507 - -0.1
3,762,682 - DvMF_2986 0.14 +0.5
3,762,719 + DvMF_2986 0.15 -0.1
3,762,719 - DvMF_2986 0.15 -0.7
3,762,777 - DvMF_2986 0.17 -0.5
3,762,895 + DvMF_2986 0.20 -1.0
3,762,904 + DvMF_2986 0.20 -0.7
3,763,128 - DvMF_2986 0.26 -1.3
3,763,136 + DvMF_2986 0.26 -0.3
3,763,149 - DvMF_2986 0.27 +1.9
3,763,267 - DvMF_2986 0.30 -0.3
3,763,417 + DvMF_2986 0.34 -0.5
3,763,477 - DvMF_2986 0.36 -3.6
3,763,786 + DvMF_2986 0.44 -1.1
3,763,849 - DvMF_2986 0.46 -0.5
3,763,862 + DvMF_2986 0.46 -0.7
3,764,013 - DvMF_2986 0.50 -1.6
3,764,088 + DvMF_2986 0.52 -1.6
3,764,359 + DvMF_2986 0.60 -0.2
3,764,474 - DvMF_2986 0.63 +0.5
3,764,613 - DvMF_2986 0.67 -0.8
3,764,663 + DvMF_2986 0.68 -0.4
3,764,793 - DvMF_2986 0.71 -0.6
3,765,042 - DvMF_2986 0.78 +0.1
3,765,123 - DvMF_2986 0.80 -0.8
3,765,160 + DvMF_2986 0.81 +0.6
3,765,164 - DvMF_2986 0.82 -0.3
3,765,227 + DvMF_2986 0.83 -0.3
3,765,258 - DvMF_2986 0.84 -0.8
3,765,311 + DvMF_2986 0.85 -0.6
3,765,361 + DvMF_2986 0.87 +0.3
3,765,482 + -0.9
3,765,582 - -0.1
3,765,659 - -0.4
3,765,713 - -0.5
3,765,885 - +0.0
3,766,055 + -0.1
3,766,063 - +0.4
3,766,087 - +1.3
3,766,104 - DvMF_2987 0.14 +0.9
3,766,374 - +0.7
3,766,508 + +0.5
3,766,516 - +0.4
3,766,545 - +0.9
3,766,555 - +0.1
3,766,685 + +0.2
3,766,782 - +1.1
3,766,782 - +0.4

Or see this region's nucleotide sequence