Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2985 and DvMF_2986 are separated by 310 nucleotides DvMF_2986 and DvMF_2987 are separated by 207 nucleotides DvMF_2987 and DvMF_2988 are separated by 360 nucleotides
DvMF_2985: DvMF_2985 - Radical SAM domain protein (RefSeq), at 3,759,533 to 3,761,848
_2985
DvMF_2986: DvMF_2986 - multi-sensor hybrid histidine kinase (RefSeq), at 3,762,159 to 3,765,845
_2986
DvMF_2987: DvMF_2987 - EF hand domain-containing protein (RefSeq), at 3,766,053 to 3,766,406
_2987
DvMF_2988: DvMF_2988 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 3,766,767 to 3,768,821
_2988
Position (kb)
3762
3763
3764
3765
3766 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3761.259 kb on + strand, within DvMF_2985 at 3761.283 kb on + strand, within DvMF_2985 at 3761.765 kb on + strand at 3761.774 kb on + strand at 3761.782 kb on - strand at 3762.123 kb on - strand at 3762.186 kb on + strand at 3762.194 kb on - strand at 3762.338 kb on + strand at 3762.348 kb on + strand at 3762.398 kb on - strand at 3762.398 kb on - strand at 3762.507 kb on - strand at 3762.682 kb on - strand, within DvMF_2986 at 3762.719 kb on + strand, within DvMF_2986 at 3762.719 kb on - strand, within DvMF_2986 at 3762.777 kb on - strand, within DvMF_2986 at 3762.895 kb on + strand, within DvMF_2986 at 3762.904 kb on + strand, within DvMF_2986 at 3763.128 kb on - strand, within DvMF_2986 at 3763.136 kb on + strand, within DvMF_2986 at 3763.149 kb on - strand, within DvMF_2986 at 3763.267 kb on - strand, within DvMF_2986 at 3763.417 kb on + strand, within DvMF_2986 at 3763.477 kb on - strand, within DvMF_2986 at 3763.786 kb on + strand, within DvMF_2986 at 3763.849 kb on - strand, within DvMF_2986 at 3763.862 kb on + strand, within DvMF_2986 at 3764.013 kb on - strand, within DvMF_2986 at 3764.088 kb on + strand, within DvMF_2986 at 3764.359 kb on + strand, within DvMF_2986 at 3764.474 kb on - strand, within DvMF_2986 at 3764.613 kb on - strand, within DvMF_2986 at 3764.663 kb on + strand, within DvMF_2986 at 3764.793 kb on - strand, within DvMF_2986 at 3765.042 kb on - strand, within DvMF_2986 at 3765.123 kb on - strand, within DvMF_2986 at 3765.160 kb on + strand, within DvMF_2986 at 3765.164 kb on - strand, within DvMF_2986 at 3765.227 kb on + strand, within DvMF_2986 at 3765.258 kb on - strand, within DvMF_2986 at 3765.311 kb on + strand, within DvMF_2986 at 3765.361 kb on + strand, within DvMF_2986 at 3765.482 kb on + strand at 3765.582 kb on - strand at 3765.659 kb on - strand at 3765.713 kb on - strand at 3765.885 kb on - strand at 3766.055 kb on + strand at 3766.063 kb on - strand at 3766.087 kb on - strand at 3766.104 kb on - strand, within DvMF_2987 at 3766.374 kb on - strand at 3766.508 kb on + strand at 3766.516 kb on - strand at 3766.545 kb on - strand at 3766.555 kb on - strand at 3766.685 kb on + strand at 3766.782 kb on - strand at 3766.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 3,761,259 + DvMF_2985 0.75 +0.4 3,761,283 + DvMF_2985 0.76 +0.9 3,761,765 + +0.8 3,761,774 + +0.5 3,761,782 - +0.6 3,762,123 - +0.6 3,762,186 + -0.8 3,762,194 - -0.2 3,762,338 + +0.9 3,762,348 + +0.1 3,762,398 - -1.2 3,762,398 - -0.9 3,762,507 - -0.1 3,762,682 - DvMF_2986 0.14 +0.5 3,762,719 + DvMF_2986 0.15 -0.1 3,762,719 - DvMF_2986 0.15 -0.7 3,762,777 - DvMF_2986 0.17 -0.5 3,762,895 + DvMF_2986 0.20 -1.0 3,762,904 + DvMF_2986 0.20 -0.7 3,763,128 - DvMF_2986 0.26 -1.3 3,763,136 + DvMF_2986 0.26 -0.3 3,763,149 - DvMF_2986 0.27 +1.9 3,763,267 - DvMF_2986 0.30 -0.3 3,763,417 + DvMF_2986 0.34 -0.5 3,763,477 - DvMF_2986 0.36 -3.6 3,763,786 + DvMF_2986 0.44 -1.1 3,763,849 - DvMF_2986 0.46 -0.5 3,763,862 + DvMF_2986 0.46 -0.7 3,764,013 - DvMF_2986 0.50 -1.6 3,764,088 + DvMF_2986 0.52 -1.6 3,764,359 + DvMF_2986 0.60 -0.2 3,764,474 - DvMF_2986 0.63 +0.5 3,764,613 - DvMF_2986 0.67 -0.8 3,764,663 + DvMF_2986 0.68 -0.4 3,764,793 - DvMF_2986 0.71 -0.6 3,765,042 - DvMF_2986 0.78 +0.1 3,765,123 - DvMF_2986 0.80 -0.8 3,765,160 + DvMF_2986 0.81 +0.6 3,765,164 - DvMF_2986 0.82 -0.3 3,765,227 + DvMF_2986 0.83 -0.3 3,765,258 - DvMF_2986 0.84 -0.8 3,765,311 + DvMF_2986 0.85 -0.6 3,765,361 + DvMF_2986 0.87 +0.3 3,765,482 + -0.9 3,765,582 - -0.1 3,765,659 - -0.4 3,765,713 - -0.5 3,765,885 - +0.0 3,766,055 + -0.1 3,766,063 - +0.4 3,766,087 - +1.3 3,766,104 - DvMF_2987 0.14 +0.9 3,766,374 - +0.7 3,766,508 + +0.5 3,766,516 - +0.4 3,766,545 - +0.9 3,766,555 - +0.1 3,766,685 + +0.2 3,766,782 - +1.1 3,766,782 - +0.4
Or see this region's nucleotide sequence