Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2973 and DvMF_2974 are separated by 87 nucleotides DvMF_2974 and DvMF_2975 are separated by 288 nucleotides DvMF_2975 and DvMF_2976 are separated by 1 nucleotides DvMF_2976 and DvMF_2977 are separated by 113 nucleotides
DvMF_2973: DvMF_2973 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,749,108 to 3,750,070
_2973
DvMF_2974: DvMF_2974 - transcriptional regulator, HxlR family (RefSeq), at 3,750,158 to 3,750,640
_2974
DvMF_2975: DvMF_2975 - nitroreductase (RefSeq), at 3,750,929 to 3,751,438
_2975
DvMF_2976: DvMF_2976 - 4-oxalocrotonate tautomerase (RefSeq), at 3,751,440 to 3,751,628
_2976
DvMF_2977: DvMF_2977 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 3,751,742 to 3,752,860
_2977
Position (kb)
3750
3751
3752 Strain fitness (log2 ratio)
-1
0
1
2 at 3749.980 kb on - strand at 3749.989 kb on - strand at 3749.999 kb on - strand at 3750.179 kb on + strand at 3750.477 kb on - strand, within DvMF_2974 at 3750.521 kb on - strand, within DvMF_2974 at 3750.622 kb on - strand at 3750.993 kb on - strand, within DvMF_2975 at 3751.030 kb on + strand, within DvMF_2975 at 3751.058 kb on - strand, within DvMF_2975 at 3751.223 kb on + strand, within DvMF_2975 at 3751.264 kb on - strand, within DvMF_2975 at 3751.285 kb on - strand, within DvMF_2975 at 3752.360 kb on - strand, within DvMF_2977 at 3752.384 kb on - strand, within DvMF_2977
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 3,749,980 - +1.0 3,749,989 - +0.7 3,749,999 - +0.6 3,750,179 + -0.2 3,750,477 - DvMF_2974 0.66 +0.1 3,750,521 - DvMF_2974 0.75 +0.9 3,750,622 - +0.8 3,750,993 - DvMF_2975 0.13 +1.0 3,751,030 + DvMF_2975 0.20 +0.4 3,751,058 - DvMF_2975 0.25 +0.2 3,751,223 + DvMF_2975 0.58 +0.7 3,751,264 - DvMF_2975 0.66 +1.4 3,751,285 - DvMF_2975 0.70 +2.5 3,752,360 - DvMF_2977 0.55 +2.4 3,752,384 - DvMF_2977 0.57 +0.5
Or see this region's nucleotide sequence