Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2877 and DvMF_2878 are separated by 3 nucleotides DvMF_2878 and DvMF_2879 are separated by 54 nucleotides DvMF_2879 and DvMF_2880 are separated by 97 nucleotides
DvMF_2877: DvMF_2877 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 3,634,888 to 3,636,663
_2877
DvMF_2878: DvMF_2878 - Phosphotransferase system, phosphocarrier protein HPr (RefSeq), at 3,636,667 to 3,636,963
_2878
DvMF_2879: DvMF_2879 - PTS system mannose/fructose/sorbose family IID component (RefSeq), at 3,637,018 to 3,637,797
_2879
DvMF_2880: DvMF_2880 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 3,637,895 to 3,638,734
_2880
Position (kb)
3636
3637 Strain fitness (log2 ratio)
-1
0
1 at 3635.770 kb on + strand, within DvMF_2877 at 3635.833 kb on - strand, within DvMF_2877 at 3635.968 kb on - strand, within DvMF_2877 at 3636.061 kb on - strand, within DvMF_2877 at 3636.144 kb on + strand, within DvMF_2877 at 3636.152 kb on - strand, within DvMF_2877 at 3636.177 kb on - strand, within DvMF_2877 at 3636.195 kb on + strand, within DvMF_2877 at 3636.203 kb on - strand, within DvMF_2877 at 3636.212 kb on + strand, within DvMF_2877 at 3636.467 kb on - strand, within DvMF_2877 at 3636.527 kb on - strand at 3636.664 kb on + strand at 3636.664 kb on + strand at 3636.918 kb on + strand, within DvMF_2878 at 3636.926 kb on - strand, within DvMF_2878 at 3637.052 kb on + strand at 3637.321 kb on + strand, within DvMF_2879 at 3637.421 kb on + strand, within DvMF_2879 at 3637.444 kb on + strand, within DvMF_2879 at 3637.479 kb on + strand, within DvMF_2879 at 3637.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 3,635,770 + DvMF_2877 0.50 -0.7 3,635,833 - DvMF_2877 0.53 -0.2 3,635,968 - DvMF_2877 0.61 +0.4 3,636,061 - DvMF_2877 0.66 +0.3 3,636,144 + DvMF_2877 0.71 -0.1 3,636,152 - DvMF_2877 0.71 -0.0 3,636,177 - DvMF_2877 0.73 +1.1 3,636,195 + DvMF_2877 0.74 +0.8 3,636,203 - DvMF_2877 0.74 +0.0 3,636,212 + DvMF_2877 0.75 +0.2 3,636,467 - DvMF_2877 0.89 +0.4 3,636,527 - -0.2 3,636,664 + -0.1 3,636,664 + -0.4 3,636,918 + DvMF_2878 0.85 -0.2 3,636,926 - DvMF_2878 0.87 -0.6 3,637,052 + +0.6 3,637,321 + DvMF_2879 0.39 +0.3 3,637,421 + DvMF_2879 0.52 +0.1 3,637,444 + DvMF_2879 0.55 +0.5 3,637,479 + DvMF_2879 0.59 +0.9 3,637,900 - -0.4
Or see this region's nucleotide sequence