Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2793 and DvMF_2794 are separated by 355 nucleotides DvMF_2794 and DvMF_2795 are separated by 105 nucleotides DvMF_2795 and DvMF_2796 are separated by 528 nucleotides
DvMF_2793: DvMF_2793 - Pirin domain protein (RefSeq), at 3,536,260 to 3,537,198
_2793
DvMF_2794: DvMF_2794 - hypothetical protein (RefSeq), at 3,537,554 to 3,537,877
_2794
DvMF_2795: DvMF_2795 - peptidase M29 aminopeptidase II (RefSeq), at 3,537,983 to 3,539,182
_2795
DvMF_2796: DvMF_2796 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,539,711 to 3,541,453
_2796
Position (kb)
3537
3538
3539
3540 Strain fitness (log2 ratio)
-1
0
1
2 at 3536.991 kb on + strand, within DvMF_2793 at 3537.084 kb on + strand, within DvMF_2793 at 3537.310 kb on - strand at 3537.329 kb on + strand at 3537.444 kb on + strand at 3537.452 kb on - strand at 3537.489 kb on - strand at 3537.517 kb on + strand at 3537.530 kb on - strand at 3537.535 kb on - strand at 3537.535 kb on - strand at 3537.559 kb on + strand at 3537.625 kb on + strand, within DvMF_2794 at 3538.238 kb on - strand, within DvMF_2795 at 3538.441 kb on + strand, within DvMF_2795 at 3538.474 kb on + strand, within DvMF_2795 at 3538.551 kb on - strand, within DvMF_2795 at 3538.551 kb on - strand, within DvMF_2795 at 3538.783 kb on + strand, within DvMF_2795 at 3538.794 kb on - strand, within DvMF_2795 at 3538.828 kb on - strand, within DvMF_2795 at 3538.978 kb on - strand, within DvMF_2795 at 3539.490 kb on - strand at 3539.709 kb on + strand at 3539.717 kb on - strand at 3539.717 kb on - strand at 3539.717 kb on - strand at 3539.758 kb on - strand at 3539.931 kb on - strand, within DvMF_2796 at 3540.134 kb on + strand, within DvMF_2796 at 3540.134 kb on + strand, within DvMF_2796
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 3,536,991 + DvMF_2793 0.78 +0.2 3,537,084 + DvMF_2793 0.88 +0.6 3,537,310 - +0.4 3,537,329 + +0.1 3,537,444 + +0.1 3,537,452 - -0.1 3,537,489 - -0.0 3,537,517 + +0.3 3,537,530 - +0.5 3,537,535 - +0.3 3,537,535 - +1.0 3,537,559 + +0.2 3,537,625 + DvMF_2794 0.22 +1.0 3,538,238 - DvMF_2795 0.21 +1.2 3,538,441 + DvMF_2795 0.38 +0.8 3,538,474 + DvMF_2795 0.41 +0.4 3,538,551 - DvMF_2795 0.47 +0.7 3,538,551 - DvMF_2795 0.47 +0.2 3,538,783 + DvMF_2795 0.67 +1.3 3,538,794 - DvMF_2795 0.68 +0.3 3,538,828 - DvMF_2795 0.70 +0.8 3,538,978 - DvMF_2795 0.83 +0.5 3,539,490 - +0.0 3,539,709 + +2.3 3,539,717 - +0.1 3,539,717 - +0.6 3,539,717 - +0.2 3,539,758 - +0.1 3,539,931 - DvMF_2796 0.13 +0.9 3,540,134 + DvMF_2796 0.24 +0.1 3,540,134 + DvMF_2796 0.24 +0.4
Or see this region's nucleotide sequence