Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2553 and DvMF_2554 are separated by 85 nucleotides DvMF_2554 and DvMF_2555 are separated by 20 nucleotides DvMF_2555 and DvMF_2556 are separated by 95 nucleotides DvMF_2556 and DvMF_2557 are separated by 20 nucleotides
DvMF_2553: DvMF_2553 - hypothetical protein (RefSeq), at 3,227,897 to 3,228,463
_2553
DvMF_2554: DvMF_2554 - acidic cytochrome c3 (RefSeq), at 3,228,549 to 3,229,013
_2554
DvMF_2555: DvMF_2555 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,229,034 to 3,230,371
_2555
DvMF_2556: DvMF_2556 - hypothetical protein (RefSeq), at 3,230,467 to 3,231,126
_2556
DvMF_2557: DvMF_2557 - hypothetical protein (RefSeq), at 3,231,147 to 3,232,502
_2557
Position (kb)
3229
3230
3231 Strain fitness (log2 ratio)
-1
0
1 at 3228.056 kb on + strand, within DvMF_2553 at 3228.064 kb on - strand, within DvMF_2553 at 3228.099 kb on + strand, within DvMF_2553 at 3228.214 kb on + strand, within DvMF_2553 at 3228.222 kb on - strand, within DvMF_2553 at 3228.285 kb on + strand, within DvMF_2553 at 3228.295 kb on + strand, within DvMF_2553 at 3228.295 kb on + strand, within DvMF_2553 at 3228.351 kb on + strand, within DvMF_2553 at 3228.702 kb on - strand, within DvMF_2554 at 3228.801 kb on - strand, within DvMF_2554 at 3229.232 kb on - strand, within DvMF_2555 at 3229.319 kb on - strand, within DvMF_2555 at 3229.620 kb on + strand, within DvMF_2555 at 3229.653 kb on + strand, within DvMF_2555 at 3229.691 kb on - strand, within DvMF_2555 at 3229.700 kb on - strand, within DvMF_2555 at 3229.808 kb on - strand, within DvMF_2555 at 3229.991 kb on + strand, within DvMF_2555 at 3230.004 kb on + strand, within DvMF_2555 at 3230.005 kb on - strand, within DvMF_2555 at 3230.012 kb on - strand, within DvMF_2555 at 3230.074 kb on + strand, within DvMF_2555 at 3230.132 kb on + strand, within DvMF_2555 at 3230.309 kb on - strand at 3230.455 kb on - strand at 3230.510 kb on + strand at 3230.568 kb on - strand, within DvMF_2556 at 3230.880 kb on - strand, within DvMF_2556 at 3230.975 kb on + strand, within DvMF_2556 at 3231.083 kb on + strand at 3231.083 kb on + strand at 3231.161 kb on + strand at 3231.161 kb on + strand at 3231.205 kb on + strand at 3231.366 kb on + strand, within DvMF_2557
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 3,228,056 + DvMF_2553 0.28 -0.3 3,228,064 - DvMF_2553 0.29 +0.9 3,228,099 + DvMF_2553 0.36 +0.9 3,228,214 + DvMF_2553 0.56 +0.1 3,228,222 - DvMF_2553 0.57 -0.3 3,228,285 + DvMF_2553 0.68 -0.1 3,228,295 + DvMF_2553 0.70 +0.1 3,228,295 + DvMF_2553 0.70 +0.4 3,228,351 + DvMF_2553 0.80 +0.1 3,228,702 - DvMF_2554 0.33 -0.7 3,228,801 - DvMF_2554 0.54 -1.3 3,229,232 - DvMF_2555 0.15 -0.9 3,229,319 - DvMF_2555 0.21 -0.9 3,229,620 + DvMF_2555 0.44 -0.4 3,229,653 + DvMF_2555 0.46 -0.7 3,229,691 - DvMF_2555 0.49 -0.6 3,229,700 - DvMF_2555 0.50 -0.6 3,229,808 - DvMF_2555 0.58 -0.7 3,229,991 + DvMF_2555 0.72 -0.9 3,230,004 + DvMF_2555 0.72 -0.4 3,230,005 - DvMF_2555 0.73 -0.7 3,230,012 - DvMF_2555 0.73 -0.4 3,230,074 + DvMF_2555 0.78 -0.3 3,230,132 + DvMF_2555 0.82 -0.2 3,230,309 - -0.7 3,230,455 - +0.1 3,230,510 + -0.2 3,230,568 - DvMF_2556 0.15 -0.5 3,230,880 - DvMF_2556 0.63 -0.6 3,230,975 + DvMF_2556 0.77 -0.4 3,231,083 + -0.8 3,231,083 + -0.4 3,231,161 + +0.2 3,231,161 + -0.1 3,231,205 + -0.1 3,231,366 + DvMF_2557 0.16 -0.1
Or see this region's nucleotide sequence