Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2205

Experiment: 5 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2204 and DvMF_2205 are separated by 284 nucleotidesDvMF_2205 and DvMF_2206 are separated by 56 nucleotides DvMF_2204: DvMF_2204 - aminotransferase class I and II (RefSeq), at 2,757,407 to 2,758,579 _2204 DvMF_2205: DvMF_2205 - sugar fermentation stimulation protein (RefSeq), at 2,758,864 to 2,759,802 _2205 DvMF_2206: DvMF_2206 - hypothetical protein (RefSeq), at 2,759,859 to 2,760,134 _2206 Position (kb) 2758 2759 2760Strain fitness (log2 ratio) -2 -1 0 1at 2757.866 kb on + strand, within DvMF_2204at 2757.866 kb on + strand, within DvMF_2204at 2757.866 kb on + strand, within DvMF_2204at 2757.867 kb on + strand, within DvMF_2204at 2757.875 kb on - strand, within DvMF_2204at 2758.134 kb on + strand, within DvMF_2204at 2758.334 kb on - strand, within DvMF_2204at 2758.356 kb on + strand, within DvMF_2204at 2758.411 kb on - strand, within DvMF_2204at 2758.449 kb on - strand, within DvMF_2204at 2758.457 kb on - strand, within DvMF_2204at 2758.500 kb on + strandat 2758.545 kb on + strandat 2758.545 kb on + strandat 2759.089 kb on + strand, within DvMF_2205at 2759.135 kb on + strand, within DvMF_2205at 2759.179 kb on - strand, within DvMF_2205at 2759.179 kb on - strand, within DvMF_2205at 2759.343 kb on - strand, within DvMF_2205at 2759.479 kb on - strand, within DvMF_2205at 2759.627 kb on + strand, within DvMF_2205at 2759.635 kb on - strand, within DvMF_2205at 2759.654 kb on + strand, within DvMF_2205at 2759.754 kb on - strandat 2759.994 kb on - strand, within DvMF_2206at 2760.308 kb on + strandat 2760.425 kb on - strandat 2760.466 kb on - strandat 2760.585 kb on - strandat 2760.612 kb on + strandat 2760.620 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
remove
2,757,866 + DvMF_2204 0.39 -0.9
2,757,866 + DvMF_2204 0.39 -1.8
2,757,866 + DvMF_2204 0.39 -1.2
2,757,867 + DvMF_2204 0.39 -0.9
2,757,875 - DvMF_2204 0.40 -0.7
2,758,134 + DvMF_2204 0.62 -1.0
2,758,334 - DvMF_2204 0.79 -0.5
2,758,356 + DvMF_2204 0.81 -1.6
2,758,411 - DvMF_2204 0.86 -0.8
2,758,449 - DvMF_2204 0.89 -0.6
2,758,457 - DvMF_2204 0.90 -0.8
2,758,500 + -0.0
2,758,545 + -0.8
2,758,545 + -0.6
2,759,089 + DvMF_2205 0.24 +0.1
2,759,135 + DvMF_2205 0.29 +0.3
2,759,179 - DvMF_2205 0.34 +0.1
2,759,179 - DvMF_2205 0.34 -0.0
2,759,343 - DvMF_2205 0.51 +0.4
2,759,479 - DvMF_2205 0.65 +0.5
2,759,627 + DvMF_2205 0.81 +0.4
2,759,635 - DvMF_2205 0.82 +0.3
2,759,654 + DvMF_2205 0.84 -0.2
2,759,754 - +0.2
2,759,994 - DvMF_2206 0.49 +0.7
2,760,308 + +0.6
2,760,425 - +0.9
2,760,466 - +1.2
2,760,585 - +0.6
2,760,612 + +0.2
2,760,620 - +0.8

Or see this region's nucleotide sequence