Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2196

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2195 and DvMF_2196 are separated by 184 nucleotidesDvMF_2196 and DvMF_2197 are separated by 453 nucleotides DvMF_2195: DvMF_2195 - hypothetical protein (RefSeq), at 2,741,701 to 2,742,951 _2195 DvMF_2196: DvMF_2196 - FAD linked oxidase domain protein (RefSeq), at 2,743,136 to 2,745,964 _2196 DvMF_2197: DvMF_2197 - protein of unknown function DUF805 (RefSeq), at 2,746,418 to 2,747,458 _2197 Position (kb) 2743 2744 2745 2746Strain fitness (log2 ratio) -1 0 1at 2742.397 kb on + strand, within DvMF_2195at 2742.769 kb on + strand, within DvMF_2195at 2742.769 kb on - strand, within DvMF_2195at 2742.815 kb on + strand, within DvMF_2195at 2742.823 kb on - strand, within DvMF_2195at 2742.975 kb on + strandat 2743.030 kb on - strandat 2743.308 kb on - strandat 2743.687 kb on - strand, within DvMF_2196at 2743.728 kb on - strand, within DvMF_2196at 2743.901 kb on - strand, within DvMF_2196at 2744.006 kb on - strand, within DvMF_2196at 2744.185 kb on + strand, within DvMF_2196at 2744.551 kb on + strand, within DvMF_2196at 2744.694 kb on + strand, within DvMF_2196at 2744.921 kb on - strand, within DvMF_2196at 2745.039 kb on - strand, within DvMF_2196at 2745.042 kb on - strand, within DvMF_2196at 2745.431 kb on + strand, within DvMF_2196at 2745.431 kb on + strand, within DvMF_2196at 2745.439 kb on - strand, within DvMF_2196at 2745.439 kb on - strand, within DvMF_2196at 2745.478 kb on + strand, within DvMF_2196at 2745.486 kb on - strand, within DvMF_2196at 2745.571 kb on - strand, within DvMF_2196at 2746.105 kb on + strandat 2746.110 kb on + strandat 2746.113 kb on - strandat 2746.118 kb on - strandat 2746.271 kb on - strandat 2746.416 kb on + strandat 2746.434 kb on + strandat 2746.519 kb on + strandat 2746.885 kb on + strand, within DvMF_2197

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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2,742,397 + DvMF_2195 0.56 +0.8
2,742,769 + DvMF_2195 0.85 -0.2
2,742,769 - DvMF_2195 0.85 +0.6
2,742,815 + DvMF_2195 0.89 +1.3
2,742,823 - DvMF_2195 0.90 +1.0
2,742,975 + +0.2
2,743,030 - +0.3
2,743,308 - +0.2
2,743,687 - DvMF_2196 0.19 +0.5
2,743,728 - DvMF_2196 0.21 +0.3
2,743,901 - DvMF_2196 0.27 +0.7
2,744,006 - DvMF_2196 0.31 +0.5
2,744,185 + DvMF_2196 0.37 +0.2
2,744,551 + DvMF_2196 0.50 +0.6
2,744,694 + DvMF_2196 0.55 +0.5
2,744,921 - DvMF_2196 0.63 +0.3
2,745,039 - DvMF_2196 0.67 +0.3
2,745,042 - DvMF_2196 0.67 +1.1
2,745,431 + DvMF_2196 0.81 +0.5
2,745,431 + DvMF_2196 0.81 -0.4
2,745,439 - DvMF_2196 0.81 +0.4
2,745,439 - DvMF_2196 0.81 -0.2
2,745,478 + DvMF_2196 0.83 +0.2
2,745,486 - DvMF_2196 0.83 +0.8
2,745,571 - DvMF_2196 0.86 +0.2
2,746,105 + -0.5
2,746,110 + +0.1
2,746,113 - +0.4
2,746,118 - +0.4
2,746,271 - +0.6
2,746,416 + +0.9
2,746,434 + +1.4
2,746,519 + +0.6
2,746,885 + DvMF_2197 0.45 +0.3

Or see this region's nucleotide sequence