Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2163 and DvMF_2164 are separated by 24 nucleotides DvMF_2164 and DvMF_2165 are separated by 368 nucleotides
DvMF_2163: DvMF_2163 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 2,696,715 to 2,699,951
_2163
DvMF_2164: DvMF_2164 - efflux transporter, RND family, MFP subunit (RefSeq), at 2,699,976 to 2,701,193
_2164
DvMF_2165: DvMF_2165 - transcriptional regulator, TetR family (RefSeq), at 2,701,562 to 2,702,353
_2165
Position (kb)
2699
2700
2701
2702 Strain fitness (log2 ratio)
-2
-1
0
1 at 2699.168 kb on + strand, within DvMF_2163 at 2699.234 kb on + strand, within DvMF_2163 at 2699.398 kb on + strand, within DvMF_2163 at 2699.424 kb on + strand, within DvMF_2163 at 2699.595 kb on - strand, within DvMF_2163 at 2699.807 kb on - strand at 2699.907 kb on - strand at 2700.042 kb on + strand at 2700.102 kb on + strand, within DvMF_2164 at 2700.224 kb on + strand, within DvMF_2164 at 2700.224 kb on + strand, within DvMF_2164 at 2700.232 kb on - strand, within DvMF_2164 at 2700.255 kb on + strand, within DvMF_2164 at 2700.262 kb on + strand, within DvMF_2164 at 2700.340 kb on + strand, within DvMF_2164 at 2700.410 kb on + strand, within DvMF_2164 at 2700.430 kb on - strand, within DvMF_2164 at 2700.519 kb on - strand, within DvMF_2164 at 2700.596 kb on - strand, within DvMF_2164 at 2700.800 kb on - strand, within DvMF_2164 at 2700.893 kb on + strand, within DvMF_2164 at 2700.901 kb on - strand, within DvMF_2164 at 2700.901 kb on - strand, within DvMF_2164 at 2700.997 kb on - strand, within DvMF_2164 at 2701.004 kb on + strand, within DvMF_2164 at 2701.041 kb on - strand, within DvMF_2164 at 2701.090 kb on + strand at 2701.150 kb on + strand at 2701.185 kb on - strand at 2701.201 kb on + strand at 2701.268 kb on - strand at 2701.308 kb on + strand at 2701.365 kb on - strand at 2701.490 kb on - strand at 2701.559 kb on + strand at 2701.635 kb on - strand at 2701.644 kb on - strand, within DvMF_2165 at 2701.954 kb on + strand, within DvMF_2165 at 2701.981 kb on + strand, within DvMF_2165
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 2,699,168 + DvMF_2163 0.76 -2.0 2,699,234 + DvMF_2163 0.78 -0.3 2,699,398 + DvMF_2163 0.83 -0.6 2,699,424 + DvMF_2163 0.84 -0.9 2,699,595 - DvMF_2163 0.89 -0.7 2,699,807 - -0.9 2,699,907 - -0.4 2,700,042 + +0.1 2,700,102 + DvMF_2164 0.10 -0.3 2,700,224 + DvMF_2164 0.20 -1.5 2,700,224 + DvMF_2164 0.20 -0.5 2,700,232 - DvMF_2164 0.21 -1.6 2,700,255 + DvMF_2164 0.23 -0.5 2,700,262 + DvMF_2164 0.23 -0.9 2,700,340 + DvMF_2164 0.30 -0.7 2,700,410 + DvMF_2164 0.36 -0.6 2,700,430 - DvMF_2164 0.37 -0.9 2,700,519 - DvMF_2164 0.45 -0.5 2,700,596 - DvMF_2164 0.51 -0.9 2,700,800 - DvMF_2164 0.68 -1.3 2,700,893 + DvMF_2164 0.75 -1.1 2,700,901 - DvMF_2164 0.76 -1.1 2,700,901 - DvMF_2164 0.76 -0.9 2,700,997 - DvMF_2164 0.84 -1.2 2,701,004 + DvMF_2164 0.84 -1.6 2,701,041 - DvMF_2164 0.87 -0.5 2,701,090 + -0.0 2,701,150 + -1.8 2,701,185 - -1.1 2,701,201 + -1.8 2,701,268 - -0.1 2,701,308 + +0.1 2,701,365 - +0.2 2,701,490 - +0.7 2,701,559 + +0.6 2,701,635 - +1.2 2,701,644 - DvMF_2165 0.10 +0.3 2,701,954 + DvMF_2165 0.49 +1.4 2,701,981 + DvMF_2165 0.53 +0.6
Or see this region's nucleotide sequence