Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2160 and DvMF_2161 are separated by 142 nucleotides DvMF_2161 and DvMF_2162 overlap by 4 nucleotides DvMF_2162 and DvMF_2163 are separated by 121 nucleotides
DvMF_2160: DvMF_2160 - hypothetical protein (RefSeq), at 2,694,278 to 2,694,454
_2160
DvMF_2161: DvMF_2161 - transcriptional regulator, MarR family (RefSeq), at 2,694,597 to 2,695,127
_2161
DvMF_2162: DvMF_2162 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,695,124 to 2,696,593
_2162
DvMF_2163: DvMF_2163 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 2,696,715 to 2,699,951
_2163
Position (kb)
2695
2696
2697 Strain fitness (log2 ratio)
-1
0
1 at 2694.182 kb on - strand at 2694.197 kb on - strand at 2694.233 kb on - strand at 2694.252 kb on + strand at 2694.410 kb on + strand, within DvMF_2160 at 2694.749 kb on + strand, within DvMF_2161 at 2694.784 kb on + strand, within DvMF_2161 at 2694.784 kb on + strand, within DvMF_2161 at 2694.989 kb on + strand, within DvMF_2161 at 2695.123 kb on - strand at 2695.198 kb on - strand at 2695.391 kb on + strand, within DvMF_2162 at 2695.973 kb on + strand, within DvMF_2162 at 2696.082 kb on - strand, within DvMF_2162 at 2696.280 kb on + strand, within DvMF_2162 at 2696.413 kb on - strand, within DvMF_2162 at 2696.580 kb on + strand at 2696.704 kb on + strand at 2696.712 kb on - strand at 2696.822 kb on - strand at 2697.009 kb on + strand at 2697.017 kb on - strand at 2697.215 kb on + strand, within DvMF_2163 at 2697.234 kb on - strand, within DvMF_2163 at 2697.310 kb on + strand, within DvMF_2163 at 2697.439 kb on + strand, within DvMF_2163 at 2697.447 kb on - strand, within DvMF_2163 at 2697.447 kb on - strand, within DvMF_2163 at 2697.447 kb on - strand, within DvMF_2163 at 2697.462 kb on - strand, within DvMF_2163 at 2697.467 kb on - strand, within DvMF_2163
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 2,694,182 - +0.2 2,694,197 - +0.0 2,694,233 - -0.0 2,694,252 + +0.4 2,694,410 + DvMF_2160 0.75 +0.6 2,694,749 + DvMF_2161 0.29 +0.1 2,694,784 + DvMF_2161 0.35 +1.1 2,694,784 + DvMF_2161 0.35 +1.0 2,694,989 + DvMF_2161 0.74 +1.2 2,695,123 - +0.9 2,695,198 - -0.4 2,695,391 + DvMF_2162 0.18 -0.7 2,695,973 + DvMF_2162 0.58 -1.0 2,696,082 - DvMF_2162 0.65 -0.8 2,696,280 + DvMF_2162 0.79 -1.3 2,696,413 - DvMF_2162 0.88 -0.7 2,696,580 + -0.8 2,696,704 + -1.1 2,696,712 - -0.9 2,696,822 - -0.4 2,697,009 + -0.1 2,697,017 - -0.8 2,697,215 + DvMF_2163 0.15 -0.2 2,697,234 - DvMF_2163 0.16 -0.5 2,697,310 + DvMF_2163 0.18 -1.2 2,697,439 + DvMF_2163 0.22 -0.8 2,697,447 - DvMF_2163 0.23 -1.0 2,697,447 - DvMF_2163 0.23 -1.1 2,697,447 - DvMF_2163 0.23 -1.3 2,697,462 - DvMF_2163 0.23 -0.2 2,697,467 - DvMF_2163 0.23 -0.9
Or see this region's nucleotide sequence