Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1978

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt11789400 and 11504646 are separated by 0 nucleotides11504646 and 11647009 overlap by 32 nucleotides11647009 and 11789401 overlap by 32 nucleotides11789401 and 11504647 are separated by 0 nucleotides11504647 and 11647010 overlap by 33 nucleotides11647010 and 11789402 overlap by 33 nucleotides11789402 and 11504648 are separated by 0 nucleotides11504648 and 11647011 overlap by 32 nucleotides11647011 and 11789403 overlap by 32 nucleotides11789403 and 11504649 are separated by 0 nucleotides11504649 and 11647012 overlap by 34 nucleotides11647012 and 11789404 overlap by 34 nucleotides11789404 and 11504650 are separated by 0 nucleotides11504650 and 11647013 overlap by 32 nucleotides11647013 and 11789405 overlap by 32 nucleotides11789405 and 11504651 are separated by 0 nucleotides11504651 and 11647014 overlap by 34 nucleotides11647014 and 11789406 overlap by 34 nucleotides11789406 and 11504652 are separated by 0 nucleotides11504652 and 11647015 overlap by 32 nucleotides11647015 and 11789407 overlap by 32 nucleotides11789407 and 11504653 are separated by 0 nucleotides11504653 and 11647016 overlap by 34 nucleotides11647016 and 11789408 overlap by 34 nucleotides11789408 and 11504654 are separated by 0 nucleotides11504654 and 11647017 overlap by 32 nucleotides11647017 and 11789409 overlap by 32 nucleotides11789409 and 11504655 are separated by 0 nucleotides11504655 and 11647018 overlap by 34 nucleotides11647018 and 11789410 overlap by 34 nucleotides11789410 and 11504656 are separated by 0 nucleotides11504656 and 11647019 overlap by 32 nucleotides11647019 and 11789411 overlap by 32 nucleotides11789411 and 11504657 are separated by 0 nucleotides11504657 and 11647020 overlap by 34 nucleotides11647020 and 11789412 overlap by 34 nucleotides11789412 and 11504658 are separated by 0 nucleotides11504658 and 11647021 overlap by 32 nucleotides11647021 and 11789413 overlap by 32 nucleotides11789413 and 11504659 are separated by 0 nucleotides11504659 and 11647022 overlap by 34 nucleotides11647022 and 11789414 overlap by 34 nucleotides11789414 and 11504660 are separated by 0 nucleotides11504660 and 11647023 overlap by 32 nucleotides11647023 and 11789415 overlap by 32 nucleotides11789415 and 11504661 are separated by 0 nucleotides11504661 and 11647024 overlap by 36 nucleotides11647024 and 11789416 overlap by 36 nucleotides11789416 and 11504662 are separated by 0 nucleotides11504662 and 11647025 overlap by 32 nucleotides11647025 and 11789417 overlap by 32 nucleotides11789417 and 11504663 are separated by 0 nucleotides11504663 and 11647026 overlap by 35 nucleotides11647026 and 11789418 overlap by 35 nucleotides11789418 and 11504664 are separated by 0 nucleotides11504664 and 11647027 overlap by 32 nucleotides11647027 and 11789419 overlap by 32 nucleotides11789419 and 11504665 are separated by 0 nucleotides11504665 and 11647028 overlap by 34 nucleotides11647028 and 11789420 overlap by 34 nucleotides11789420 and 11504666 are separated by 0 nucleotides11504666 and 11647029 overlap by 32 nucleotides11647029 and 11789421 overlap by 32 nucleotides11789421 and 11504667 are separated by 0 nucleotides11504667 and 11647030 overlap by 34 nucleotides11647030 and 11789422 overlap by 34 nucleotides11789422 and 11504668 are separated by 0 nucleotides11504668 and 11647031 overlap by 32 nucleotides11647031 and 11789423 overlap by 32 nucleotides11789423 and 11504669 are separated by 0 nucleotides11504669 and 11647032 overlap by 33 nucleotides11647032 and 11789424 overlap by 33 nucleotides11789424 and 11504670 are separated by 0 nucleotides11504670 and 11647033 overlap by 32 nucleotides11647033 and 11789425 overlap by 32 nucleotides11789425 and 11504671 are separated by 0 nucleotides11504671 and 11647034 overlap by 31 nucleotides11647034 and 11789426 overlap by 31 nucleotides11789426 and 11504672 are separated by 0 nucleotides11504672 and 11647035 overlap by 18 nucleotides11647035 and 11789427 overlap by 18 nucleotides11789427 and DvMF_1978 are separated by 119 nucleotidesDvMF_1978 and DvMF_1979 are separated by 103 nucleotidesDvMF_1979 and DvMF_1980 are separated by 273 nucleotides 11504645 - no description, at 2,447,229 to 2,447,263 11504645 11647008 - no description, at 2,447,229 to 2,447,263 11647008 11789400 - no description, at 2,447,229 to 2,447,263 11789400 11504646 - no description, at 2,447,264 to 2,447,295 11504646 11647009 - no description, at 2,447,264 to 2,447,295 11647009 11789401 - no description, at 2,447,264 to 2,447,295 11789401 11504647 - no description, at 2,447,296 to 2,447,328 11504647 11647010 - no description, at 2,447,296 to 2,447,328 11647010 11789402 - no description, at 2,447,296 to 2,447,328 11789402 11504648 - no description, at 2,447,329 to 2,447,360 11504648 11647011 - no description, at 2,447,329 to 2,447,360 11647011 11789403 - no description, at 2,447,329 to 2,447,360 11789403 11504649 - no description, at 2,447,361 to 2,447,394 11504649 11647012 - no description, at 2,447,361 to 2,447,394 11647012 11789404 - no description, at 2,447,361 to 2,447,394 11789404 11504650 - no description, at 2,447,395 to 2,447,426 11504650 11647013 - no description, at 2,447,395 to 2,447,426 11647013 11789405 - no description, at 2,447,395 to 2,447,426 11789405 11504651 - no description, at 2,447,427 to 2,447,460 11504651 11647014 - no description, at 2,447,427 to 2,447,460 11647014 11789406 - no description, at 2,447,427 to 2,447,460 11789406 11504652 - no description, at 2,447,461 to 2,447,492 11504652 11647015 - no description, at 2,447,461 to 2,447,492 11647015 11789407 - no description, at 2,447,461 to 2,447,492 11789407 11504653 - no description, at 2,447,493 to 2,447,526 11504653 11647016 - no description, at 2,447,493 to 2,447,526 11647016 11789408 - no description, at 2,447,493 to 2,447,526 11789408 11504654 - no description, at 2,447,527 to 2,447,558 11504654 11647017 - no description, at 2,447,527 to 2,447,558 11647017 11789409 - no description, at 2,447,527 to 2,447,558 11789409 11504655 - no description, at 2,447,559 to 2,447,592 11504655 11647018 - no description, at 2,447,559 to 2,447,592 11647018 11789410 - no description, at 2,447,559 to 2,447,592 11789410 11504656 - no description, at 2,447,593 to 2,447,624 11504656 11647019 - no description, at 2,447,593 to 2,447,624 11647019 11789411 - no description, at 2,447,593 to 2,447,624 11789411 11504657 - no description, at 2,447,625 to 2,447,658 11504657 11647020 - no description, at 2,447,625 to 2,447,658 11647020 11789412 - no description, at 2,447,625 to 2,447,658 11789412 11504658 - no description, at 2,447,659 to 2,447,690 11504658 11647021 - no description, at 2,447,659 to 2,447,690 11647021 11789413 - no description, at 2,447,659 to 2,447,690 11789413 11504659 - no description, at 2,447,691 to 2,447,724 11504659 11647022 - no description, at 2,447,691 to 2,447,724 11647022 11789414 - no description, at 2,447,691 to 2,447,724 11789414 11504660 - no description, at 2,447,725 to 2,447,756 11504660 11647023 - no description, at 2,447,725 to 2,447,756 11647023 11789415 - no description, at 2,447,725 to 2,447,756 11789415 11504661 - no description, at 2,447,757 to 2,447,792 11504661 11647024 - no description, at 2,447,757 to 2,447,792 11647024 11789416 - no description, at 2,447,757 to 2,447,792 11789416 11504662 - no description, at 2,447,793 to 2,447,824 11504662 11647025 - no description, at 2,447,793 to 2,447,824 11647025 11789417 - no description, at 2,447,793 to 2,447,824 11789417 11504663 - no description, at 2,447,825 to 2,447,859 11504663 11647026 - no description, at 2,447,825 to 2,447,859 11647026 11789418 - no description, at 2,447,825 to 2,447,859 11789418 11504664 - no description, at 2,447,860 to 2,447,891 11504664 11647027 - no description, at 2,447,860 to 2,447,891 11647027 11789419 - no description, at 2,447,860 to 2,447,891 11789419 11504665 - no description, at 2,447,892 to 2,447,925 11504665 11647028 - no description, at 2,447,892 to 2,447,925 11647028 11789420 - no description, at 2,447,892 to 2,447,925 11789420 11504666 - no description, at 2,447,926 to 2,447,957 11504666 11647029 - no description, at 2,447,926 to 2,447,957 11647029 11789421 - no description, at 2,447,926 to 2,447,957 11789421 11504667 - no description, at 2,447,958 to 2,447,991 11504667 11647030 - no description, at 2,447,958 to 2,447,991 11647030 11789422 - no description, at 2,447,958 to 2,447,991 11789422 11504668 - no description, at 2,447,992 to 2,448,023 11504668 11647031 - no description, at 2,447,992 to 2,448,023 11647031 11789423 - no description, at 2,447,992 to 2,448,023 11789423 11504669 - no description, at 2,448,024 to 2,448,056 11504669 11647032 - no description, at 2,448,024 to 2,448,056 11647032 11789424 - no description, at 2,448,024 to 2,448,056 11789424 11504670 - no description, at 2,448,057 to 2,448,088 11504670 11647033 - no description, at 2,448,057 to 2,448,088 11647033 11789425 - no description, at 2,448,057 to 2,448,088 11789425 11504671 - no description, at 2,448,089 to 2,448,119 11504671 11647034 - no description, at 2,448,089 to 2,448,119 11647034 11789426 - no description, at 2,448,089 to 2,448,119 11789426 11504672 - no description, at 2,448,120 to 2,448,137 11504672 11647035 - no description, at 2,448,120 to 2,448,137 11647035 11789427 - no description, at 2,448,120 to 2,448,137 11789427 DvMF_1978: DvMF_1978 - hypothetical protein (RefSeq), at 2,448,257 to 2,448,454 _1978 DvMF_1979: DvMF_1979 - hypothetical protein (RefSeq), at 2,448,558 to 2,449,097 _1979 DvMF_1980: DvMF_1980 - hypothetical protein (RefSeq), at 2,449,371 to 2,449,688 _1980 Position (kb) 2448 2449Strain fitness (log2 ratio) -1 0 1 2at 2447.770 kb on + strandat 2447.799 kb on - strandat 2447.806 kb on - strandat 2448.050 kb on + strandat 2448.050 kb on + strandat 2448.050 kb on + strandat 2448.268 kb on - strandat 2448.352 kb on + strand, within DvMF_1978at 2448.515 kb on - strandat 2448.605 kb on + strandat 2448.821 kb on + strand, within DvMF_1979at 2448.837 kb on - strand, within DvMF_1979at 2449.024 kb on + strand, within DvMF_1979at 2449.024 kb on + strand, within DvMF_1979at 2449.034 kb on + strand, within DvMF_1979at 2449.162 kb on + strandat 2449.202 kb on - strandat 2449.204 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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2,447,770 + +0.4
2,447,799 - +1.0
2,447,806 - +0.6
2,448,050 + +0.5
2,448,050 + +0.8
2,448,050 + +0.2
2,448,268 - +0.9
2,448,352 + DvMF_1978 0.48 +0.9
2,448,515 - +0.1
2,448,605 + +0.3
2,448,821 + DvMF_1979 0.49 +0.9
2,448,837 - DvMF_1979 0.52 +0.4
2,449,024 + DvMF_1979 0.86 +1.8
2,449,024 + DvMF_1979 0.86 +0.6
2,449,034 + DvMF_1979 0.88 +0.4
2,449,162 + +1.1
2,449,202 - -0.1
2,449,204 + +0.6

Or see this region's nucleotide sequence