Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1966 and DvMF_1967 are separated by 143 nucleotides DvMF_1967 and DvMF_1968 are separated by 56 nucleotides
DvMF_1966: DvMF_1966 - thiamine-monophosphate kinase (RefSeq), at 2,429,043 to 2,430,140
_1966
DvMF_1967: DvMF_1967 - UvrD/REP helicase (RefSeq), at 2,430,284 to 2,432,653
_1967
DvMF_1968: DvMF_1968 - type I phosphodiesterase/nucleotide pyrophosphatase (RefSeq), at 2,432,710 to 2,434,473
_1968
Position (kb)
2430
2431
2432
2433 Strain fitness (log2 ratio)
-2
-1
0
1 at 2430.158 kb on - strand at 2430.171 kb on - strand at 2430.379 kb on - strand at 2430.514 kb on - strand at 2430.684 kb on - strand, within DvMF_1967 at 2430.827 kb on + strand, within DvMF_1967 at 2430.857 kb on - strand, within DvMF_1967 at 2430.971 kb on + strand, within DvMF_1967 at 2430.997 kb on - strand, within DvMF_1967 at 2431.021 kb on + strand, within DvMF_1967 at 2431.095 kb on + strand, within DvMF_1967 at 2431.190 kb on - strand, within DvMF_1967 at 2431.256 kb on + strand, within DvMF_1967 at 2431.273 kb on + strand, within DvMF_1967 at 2431.273 kb on + strand, within DvMF_1967 at 2431.273 kb on + strand, within DvMF_1967 at 2431.281 kb on - strand, within DvMF_1967 at 2431.358 kb on + strand, within DvMF_1967 at 2431.365 kb on + strand, within DvMF_1967 at 2431.365 kb on + strand, within DvMF_1967 at 2431.365 kb on + strand, within DvMF_1967 at 2431.373 kb on - strand, within DvMF_1967 at 2431.373 kb on - strand, within DvMF_1967 at 2431.373 kb on - strand, within DvMF_1967 at 2431.443 kb on + strand, within DvMF_1967 at 2431.451 kb on - strand, within DvMF_1967 at 2431.459 kb on + strand, within DvMF_1967 at 2431.467 kb on - strand, within DvMF_1967 at 2431.553 kb on - strand, within DvMF_1967 at 2431.558 kb on - strand, within DvMF_1967 at 2431.620 kb on + strand, within DvMF_1967 at 2431.725 kb on + strand, within DvMF_1967 at 2432.078 kb on + strand, within DvMF_1967 at 2432.381 kb on + strand, within DvMF_1967 at 2432.742 kb on - strand at 2432.802 kb on - strand at 2432.925 kb on + strand, within DvMF_1968 at 2433.014 kb on - strand, within DvMF_1968 at 2433.030 kb on + strand, within DvMF_1968 at 2433.042 kb on - strand, within DvMF_1968 at 2433.130 kb on + strand, within DvMF_1968 at 2433.202 kb on - strand, within DvMF_1968 at 2433.212 kb on - strand, within DvMF_1968 at 2433.289 kb on + strand, within DvMF_1968 at 2433.556 kb on + strand, within DvMF_1968
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 2,430,158 - +0.3 2,430,171 - -0.1 2,430,379 - +0.7 2,430,514 - +0.2 2,430,684 - DvMF_1967 0.17 +0.2 2,430,827 + DvMF_1967 0.23 -0.9 2,430,857 - DvMF_1967 0.24 -0.8 2,430,971 + DvMF_1967 0.29 -0.2 2,430,997 - DvMF_1967 0.30 +0.4 2,431,021 + DvMF_1967 0.31 -0.3 2,431,095 + DvMF_1967 0.34 -2.5 2,431,190 - DvMF_1967 0.38 -0.6 2,431,256 + DvMF_1967 0.41 -1.5 2,431,273 + DvMF_1967 0.42 -1.6 2,431,273 + DvMF_1967 0.42 +1.4 2,431,273 + DvMF_1967 0.42 -1.0 2,431,281 - DvMF_1967 0.42 -0.2 2,431,358 + DvMF_1967 0.45 -0.2 2,431,365 + DvMF_1967 0.46 -0.5 2,431,365 + DvMF_1967 0.46 -1.2 2,431,365 + DvMF_1967 0.46 -0.2 2,431,373 - DvMF_1967 0.46 +0.4 2,431,373 - DvMF_1967 0.46 -0.5 2,431,373 - DvMF_1967 0.46 -0.4 2,431,443 + DvMF_1967 0.49 -0.5 2,431,451 - DvMF_1967 0.49 -1.0 2,431,459 + DvMF_1967 0.50 -0.2 2,431,467 - DvMF_1967 0.50 +0.8 2,431,553 - DvMF_1967 0.54 -0.5 2,431,558 - DvMF_1967 0.54 -0.9 2,431,620 + DvMF_1967 0.56 -1.4 2,431,725 + DvMF_1967 0.61 -0.7 2,432,078 + DvMF_1967 0.76 -1.1 2,432,381 + DvMF_1967 0.88 -1.0 2,432,742 - +0.6 2,432,802 - +0.4 2,432,925 + DvMF_1968 0.12 +0.3 2,433,014 - DvMF_1968 0.17 +0.7 2,433,030 + DvMF_1968 0.18 +0.4 2,433,042 - DvMF_1968 0.19 +0.6 2,433,130 + DvMF_1968 0.24 -0.0 2,433,202 - DvMF_1968 0.28 +0.3 2,433,212 - DvMF_1968 0.28 +0.5 2,433,289 + DvMF_1968 0.33 +0.3 2,433,556 + DvMF_1968 0.48 +0.3
Or see this region's nucleotide sequence