Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1922

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1921 and DvMF_1922 are separated by 134 nucleotidesDvMF_1922 and DvMF_1923 overlap by 1 nucleotides DvMF_1921: DvMF_1921 - A/G-specific adenine glycosylase (RefSeq), at 2,367,110 to 2,368,414 _1921 DvMF_1922: DvMF_1922 - hypothetical protein (RefSeq), at 2,368,549 to 2,371,248 _1922 DvMF_1923: DvMF_1923 - glycosyl transferase family 2 (RefSeq), at 2,371,248 to 2,372,399 _1923 Position (kb) 2368 2369 2370 2371 2372Strain fitness (log2 ratio) -1 0 1 2at 2367.572 kb on - strand, within DvMF_1921at 2367.956 kb on - strand, within DvMF_1921at 2368.722 kb on - strandat 2368.843 kb on - strand, within DvMF_1922at 2368.891 kb on + strand, within DvMF_1922at 2369.275 kb on + strand, within DvMF_1922at 2369.500 kb on - strand, within DvMF_1922at 2369.603 kb on - strand, within DvMF_1922at 2369.797 kb on - strand, within DvMF_1922at 2369.864 kb on - strand, within DvMF_1922at 2369.969 kb on + strand, within DvMF_1922at 2369.990 kb on - strand, within DvMF_1922at 2370.033 kb on + strand, within DvMF_1922at 2370.072 kb on - strand, within DvMF_1922at 2370.240 kb on + strand, within DvMF_1922at 2370.325 kb on + strand, within DvMF_1922at 2370.398 kb on + strand, within DvMF_1922at 2370.476 kb on + strand, within DvMF_1922at 2370.730 kb on + strand, within DvMF_1922at 2370.730 kb on + strand, within DvMF_1922at 2370.771 kb on - strand, within DvMF_1922at 2370.855 kb on - strand, within DvMF_1922at 2370.954 kb on - strand, within DvMF_1922at 2371.108 kb on - strandat 2371.108 kb on - strandat 2371.141 kb on - strandat 2371.212 kb on + strandat 2371.393 kb on + strand, within DvMF_1923at 2372.116 kb on - strand, within DvMF_1923

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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2,367,572 - DvMF_1921 0.35 +0.1
2,367,956 - DvMF_1921 0.65 +1.9
2,368,722 - -0.3
2,368,843 - DvMF_1922 0.11 -0.0
2,368,891 + DvMF_1922 0.13 +0.5
2,369,275 + DvMF_1922 0.27 +0.7
2,369,500 - DvMF_1922 0.35 +0.7
2,369,603 - DvMF_1922 0.39 +0.7
2,369,797 - DvMF_1922 0.46 +0.4
2,369,864 - DvMF_1922 0.49 +0.8
2,369,969 + DvMF_1922 0.53 +0.9
2,369,990 - DvMF_1922 0.53 +0.2
2,370,033 + DvMF_1922 0.55 +0.6
2,370,072 - DvMF_1922 0.56 +0.6
2,370,240 + DvMF_1922 0.63 +0.7
2,370,325 + DvMF_1922 0.66 +0.6
2,370,398 + DvMF_1922 0.68 +1.0
2,370,476 + DvMF_1922 0.71 +0.6
2,370,730 + DvMF_1922 0.81 +0.2
2,370,730 + DvMF_1922 0.81 +0.4
2,370,771 - DvMF_1922 0.82 +0.3
2,370,855 - DvMF_1922 0.85 +0.0
2,370,954 - DvMF_1922 0.89 +0.1
2,371,108 - +0.9
2,371,108 - +0.7
2,371,141 - -0.2
2,371,212 + +0.3
2,371,393 + DvMF_1923 0.13 +1.7
2,372,116 - DvMF_1923 0.75 +1.3

Or see this region's nucleotide sequence