Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1909 and DvMF_1910 are separated by 25 nucleotides DvMF_1910 and DvMF_1911 are separated by 174 nucleotides DvMF_1911 and DvMF_1912 are separated by 157 nucleotides
DvMF_1909: DvMF_1909 - CDP-glucose 4,6-dehydratase (RefSeq), at 2,353,476 to 2,354,585
_1909
DvMF_1910: DvMF_1910 - polysaccharide biosynthesis domain-containing protein (RefSeq), at 2,354,611 to 2,355,060
_1910
DvMF_1911: DvMF_1911 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,355,235 to 2,356,368
_1911
DvMF_1912: DvMF_1912 - glycosyl transferase family 2 (RefSeq), at 2,356,526 to 2,357,554
_1912
Position (kb)
2355
2356
2357 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2354.299 kb on + strand, within DvMF_1909 at 2354.616 kb on - strand at 2355.096 kb on + strand at 2355.374 kb on + strand, within DvMF_1911 at 2355.661 kb on + strand, within DvMF_1911 at 2355.661 kb on + strand, within DvMF_1911 at 2356.086 kb on + strand, within DvMF_1911 at 2356.091 kb on + strand, within DvMF_1911 at 2356.187 kb on - strand, within DvMF_1911 at 2356.703 kb on - strand, within DvMF_1912 at 2356.916 kb on + strand, within DvMF_1912 at 2356.999 kb on + strand, within DvMF_1912 at 2357.337 kb on - strand, within DvMF_1912
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 2,354,299 + DvMF_1909 0.74 -2.5 2,354,616 - +0.3 2,355,096 + -0.4 2,355,374 + DvMF_1911 0.12 -1.2 2,355,661 + DvMF_1911 0.38 -2.8 2,355,661 + DvMF_1911 0.38 -1.5 2,356,086 + DvMF_1911 0.75 -1.7 2,356,091 + DvMF_1911 0.75 -2.0 2,356,187 - DvMF_1911 0.84 -1.5 2,356,703 - DvMF_1912 0.17 -1.5 2,356,916 + DvMF_1912 0.38 -2.0 2,356,999 + DvMF_1912 0.46 -1.9 2,357,337 - DvMF_1912 0.79 -2.2
Or see this region's nucleotide sequence