Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1908 and DvMF_1909 are separated by 263 nucleotides DvMF_1909 and DvMF_1910 are separated by 25 nucleotides DvMF_1910 and DvMF_1911 are separated by 174 nucleotides
DvMF_1908: DvMF_1908 - glucose-1-phosphate cytidylyltransferase (RefSeq), at 2,352,430 to 2,353,212
_1908
DvMF_1909: DvMF_1909 - CDP-glucose 4,6-dehydratase (RefSeq), at 2,353,476 to 2,354,585
_1909
DvMF_1910: DvMF_1910 - polysaccharide biosynthesis domain-containing protein (RefSeq), at 2,354,611 to 2,355,060
_1910
DvMF_1911: DvMF_1911 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,355,235 to 2,356,368
_1911
Position (kb)
2353
2354
2355 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2352.663 kb on + strand, within DvMF_1908 at 2352.742 kb on + strand, within DvMF_1908 at 2352.767 kb on - strand, within DvMF_1908 at 2353.362 kb on - strand at 2353.418 kb on + strand at 2353.658 kb on - strand, within DvMF_1909 at 2353.688 kb on + strand, within DvMF_1909 at 2353.688 kb on + strand, within DvMF_1909 at 2353.943 kb on - strand, within DvMF_1909 at 2353.943 kb on - strand, within DvMF_1909 at 2354.180 kb on + strand, within DvMF_1909 at 2354.299 kb on + strand, within DvMF_1909 at 2354.616 kb on - strand at 2355.096 kb on + strand at 2355.374 kb on + strand, within DvMF_1911
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 2,352,663 + DvMF_1908 0.30 -1.8 2,352,742 + DvMF_1908 0.40 -2.1 2,352,767 - DvMF_1908 0.43 -2.6 2,353,362 - +0.3 2,353,418 + +0.6 2,353,658 - DvMF_1909 0.16 -1.2 2,353,688 + DvMF_1909 0.19 -3.5 2,353,688 + DvMF_1909 0.19 -3.8 2,353,943 - DvMF_1909 0.42 -2.4 2,353,943 - DvMF_1909 0.42 -3.0 2,354,180 + DvMF_1909 0.63 -1.6 2,354,299 + DvMF_1909 0.74 -2.5 2,354,616 - +0.3 2,355,096 + -0.4 2,355,374 + DvMF_1911 0.12 -1.2
Or see this region's nucleotide sequence