Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1858

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1857 and DvMF_1858 are separated by 576 nucleotidesDvMF_1858 and DvMF_1859 are separated by 5 nucleotides DvMF_1857: DvMF_1857 - hypothetical protein (RefSeq), at 2,270,876 to 2,271,508 _1857 DvMF_1858: DvMF_1858 - multi-sensor hybrid histidine kinase (RefSeq), at 2,272,085 to 2,275,660 _1858 DvMF_1859: DvMF_1859 - putative two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,275,666 to 2,277,165 _1859 Position (kb) 2272 2273 2274 2275 2276Strain fitness (log2 ratio) -2 -1 0 1 2at 2271.271 kb on - strand, within DvMF_1857at 2271.392 kb on + strand, within DvMF_1857at 2271.392 kb on + strand, within DvMF_1857at 2271.392 kb on + strand, within DvMF_1857at 2271.488 kb on - strandat 2271.594 kb on + strandat 2271.594 kb on + strandat 2271.594 kb on + strandat 2271.594 kb on + strandat 2271.594 kb on + strandat 2271.594 kb on + strandat 2271.602 kb on - strandat 2271.602 kb on - strandat 2271.602 kb on - strandat 2271.602 kb on - strandat 2271.602 kb on - strandat 2271.642 kb on - strandat 2271.684 kb on - strandat 2271.686 kb on + strandat 2271.913 kb on - strandat 2272.042 kb on - strandat 2272.345 kb on - strandat 2272.615 kb on + strand, within DvMF_1858at 2272.623 kb on - strand, within DvMF_1858at 2272.683 kb on + strand, within DvMF_1858at 2272.830 kb on + strand, within DvMF_1858at 2272.890 kb on + strand, within DvMF_1858at 2272.924 kb on + strand, within DvMF_1858at 2272.962 kb on - strand, within DvMF_1858at 2273.593 kb on + strand, within DvMF_1858at 2273.948 kb on + strand, within DvMF_1858at 2274.047 kb on + strand, within DvMF_1858at 2274.193 kb on + strand, within DvMF_1858at 2274.238 kb on - strand, within DvMF_1858at 2274.283 kb on - strand, within DvMF_1858at 2274.396 kb on - strand, within DvMF_1858at 2274.405 kb on + strand, within DvMF_1858at 2274.451 kb on - strand, within DvMF_1858at 2274.473 kb on + strand, within DvMF_1858at 2275.001 kb on - strand, within DvMF_1858at 2275.003 kb on + strand, within DvMF_1858at 2275.134 kb on + strand, within DvMF_1858at 2275.335 kb on - strandat 2275.360 kb on + strandat 2275.368 kb on - strandat 2275.473 kb on + strandat 2275.481 kb on - strandat 2275.994 kb on + strand, within DvMF_1859at 2276.068 kb on + strand, within DvMF_1859at 2276.519 kb on + strand, within DvMF_1859

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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2,271,271 - DvMF_1857 0.62 -1.2
2,271,392 + DvMF_1857 0.82 -1.5
2,271,392 + DvMF_1857 0.82 -0.5
2,271,392 + DvMF_1857 0.82 +1.1
2,271,488 - -1.2
2,271,594 + +0.4
2,271,594 + +0.9
2,271,594 + +0.9
2,271,594 + +0.7
2,271,594 + +1.0
2,271,594 + +0.9
2,271,602 - +0.4
2,271,602 - +0.6
2,271,602 - +0.5
2,271,602 - +0.7
2,271,602 - +0.6
2,271,642 - +0.2
2,271,684 - +0.2
2,271,686 + -0.1
2,271,913 - +0.8
2,272,042 - -0.4
2,272,345 - -0.4
2,272,615 + DvMF_1858 0.15 -0.5
2,272,623 - DvMF_1858 0.15 +0.4
2,272,683 + DvMF_1858 0.17 +0.2
2,272,830 + DvMF_1858 0.21 +0.0
2,272,890 + DvMF_1858 0.23 -2.5
2,272,924 + DvMF_1858 0.23 +0.0
2,272,962 - DvMF_1858 0.25 -1.8
2,273,593 + DvMF_1858 0.42 -0.7
2,273,948 + DvMF_1858 0.52 -2.2
2,274,047 + DvMF_1858 0.55 +0.0
2,274,193 + DvMF_1858 0.59 -1.2
2,274,238 - DvMF_1858 0.60 +0.1
2,274,283 - DvMF_1858 0.61 -1.5
2,274,396 - DvMF_1858 0.65 +0.8
2,274,405 + DvMF_1858 0.65 -0.2
2,274,451 - DvMF_1858 0.66 -1.8
2,274,473 + DvMF_1858 0.67 +1.1
2,275,001 - DvMF_1858 0.82 -0.2
2,275,003 + DvMF_1858 0.82 -0.6
2,275,134 + DvMF_1858 0.85 -0.2
2,275,335 - -1.3
2,275,360 + +2.4
2,275,368 - +0.2
2,275,473 + +2.5
2,275,481 - +0.4
2,275,994 + DvMF_1859 0.22 -0.8
2,276,068 + DvMF_1859 0.27 -2.2
2,276,519 + DvMF_1859 0.57 +0.8

Or see this region's nucleotide sequence