Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1857 and DvMF_1858 are separated by 576 nucleotides DvMF_1858 and DvMF_1859 are separated by 5 nucleotides
DvMF_1857: DvMF_1857 - hypothetical protein (RefSeq), at 2,270,876 to 2,271,508
_1857
DvMF_1858: DvMF_1858 - multi-sensor hybrid histidine kinase (RefSeq), at 2,272,085 to 2,275,660
_1858
DvMF_1859: DvMF_1859 - putative two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,275,666 to 2,277,165
_1859
Position (kb)
2272
2273
2274
2275
2276 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2271.271 kb on - strand, within DvMF_1857 at 2271.392 kb on + strand, within DvMF_1857 at 2271.392 kb on + strand, within DvMF_1857 at 2271.392 kb on + strand, within DvMF_1857 at 2271.488 kb on - strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.602 kb on - strand at 2271.602 kb on - strand at 2271.602 kb on - strand at 2271.602 kb on - strand at 2271.602 kb on - strand at 2271.642 kb on - strand at 2271.684 kb on - strand at 2271.686 kb on + strand at 2271.913 kb on - strand at 2272.042 kb on - strand at 2272.345 kb on - strand at 2272.615 kb on + strand, within DvMF_1858 at 2272.623 kb on - strand, within DvMF_1858 at 2272.683 kb on + strand, within DvMF_1858 at 2272.830 kb on + strand, within DvMF_1858 at 2272.890 kb on + strand, within DvMF_1858 at 2272.924 kb on + strand, within DvMF_1858 at 2272.962 kb on - strand, within DvMF_1858 at 2273.593 kb on + strand, within DvMF_1858 at 2273.948 kb on + strand, within DvMF_1858 at 2274.047 kb on + strand, within DvMF_1858 at 2274.193 kb on + strand, within DvMF_1858 at 2274.238 kb on - strand, within DvMF_1858 at 2274.283 kb on - strand, within DvMF_1858 at 2274.396 kb on - strand, within DvMF_1858 at 2274.405 kb on + strand, within DvMF_1858 at 2274.451 kb on - strand, within DvMF_1858 at 2274.473 kb on + strand, within DvMF_1858 at 2275.001 kb on - strand, within DvMF_1858 at 2275.003 kb on + strand, within DvMF_1858 at 2275.134 kb on + strand, within DvMF_1858 at 2275.335 kb on - strand at 2275.360 kb on + strand at 2275.368 kb on - strand at 2275.473 kb on + strand at 2275.481 kb on - strand at 2275.994 kb on + strand, within DvMF_1859 at 2276.068 kb on + strand, within DvMF_1859 at 2276.519 kb on + strand, within DvMF_1859
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 2,271,271 - DvMF_1857 0.62 -1.2 2,271,392 + DvMF_1857 0.82 -1.5 2,271,392 + DvMF_1857 0.82 -0.5 2,271,392 + DvMF_1857 0.82 +1.1 2,271,488 - -1.2 2,271,594 + +0.4 2,271,594 + +0.9 2,271,594 + +0.9 2,271,594 + +0.7 2,271,594 + +1.0 2,271,594 + +0.9 2,271,602 - +0.4 2,271,602 - +0.6 2,271,602 - +0.5 2,271,602 - +0.7 2,271,602 - +0.6 2,271,642 - +0.2 2,271,684 - +0.2 2,271,686 + -0.1 2,271,913 - +0.8 2,272,042 - -0.4 2,272,345 - -0.4 2,272,615 + DvMF_1858 0.15 -0.5 2,272,623 - DvMF_1858 0.15 +0.4 2,272,683 + DvMF_1858 0.17 +0.2 2,272,830 + DvMF_1858 0.21 +0.0 2,272,890 + DvMF_1858 0.23 -2.5 2,272,924 + DvMF_1858 0.23 +0.0 2,272,962 - DvMF_1858 0.25 -1.8 2,273,593 + DvMF_1858 0.42 -0.7 2,273,948 + DvMF_1858 0.52 -2.2 2,274,047 + DvMF_1858 0.55 +0.0 2,274,193 + DvMF_1858 0.59 -1.2 2,274,238 - DvMF_1858 0.60 +0.1 2,274,283 - DvMF_1858 0.61 -1.5 2,274,396 - DvMF_1858 0.65 +0.8 2,274,405 + DvMF_1858 0.65 -0.2 2,274,451 - DvMF_1858 0.66 -1.8 2,274,473 + DvMF_1858 0.67 +1.1 2,275,001 - DvMF_1858 0.82 -0.2 2,275,003 + DvMF_1858 0.82 -0.6 2,275,134 + DvMF_1858 0.85 -0.2 2,275,335 - -1.3 2,275,360 + +2.4 2,275,368 - +0.2 2,275,473 + +2.5 2,275,481 - +0.4 2,275,994 + DvMF_1859 0.22 -0.8 2,276,068 + DvMF_1859 0.27 -2.2 2,276,519 + DvMF_1859 0.57 +0.8
Or see this region's nucleotide sequence