Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1832

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1831 and DvMF_1832 overlap by 4 nucleotidesDvMF_1832 and DvMF_1833 overlap by 1 nucleotides DvMF_1831: DvMF_1831 - transcriptional regulator, MarR family (RefSeq), at 2,235,331 to 2,235,993 _1831 DvMF_1832: DvMF_1832 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,235,990 to 2,237,174 _1832 DvMF_1833: DvMF_1833 - hypothetical protein (RefSeq), at 2,237,174 to 2,238,373 _1833 Position (kb) 2235 2236 2237 2238Strain fitness (log2 ratio) -1 0 1at 2235.165 kb on - strandat 2235.172 kb on + strandat 2235.349 kb on + strandat 2235.357 kb on - strandat 2235.357 kb on - strandat 2235.599 kb on - strand, within DvMF_1831at 2235.687 kb on + strand, within DvMF_1831at 2235.725 kb on - strand, within DvMF_1831at 2235.843 kb on + strand, within DvMF_1831at 2235.846 kb on - strand, within DvMF_1831at 2235.995 kb on - strandat 2236.205 kb on + strand, within DvMF_1832at 2236.255 kb on + strand, within DvMF_1832at 2236.359 kb on + strand, within DvMF_1832at 2236.402 kb on - strand, within DvMF_1832at 2236.423 kb on - strand, within DvMF_1832at 2236.625 kb on - strand, within DvMF_1832at 2236.668 kb on - strand, within DvMF_1832at 2236.725 kb on - strand, within DvMF_1832at 2236.786 kb on - strand, within DvMF_1832at 2236.800 kb on - strand, within DvMF_1832at 2236.840 kb on - strand, within DvMF_1832at 2236.853 kb on - strand, within DvMF_1832at 2237.307 kb on + strand, within DvMF_1833at 2237.315 kb on - strand, within DvMF_1833at 2237.459 kb on - strand, within DvMF_1833at 2237.533 kb on + strand, within DvMF_1833at 2237.645 kb on + strand, within DvMF_1833at 2237.648 kb on - strand, within DvMF_1833at 2237.653 kb on - strand, within DvMF_1833at 2237.709 kb on - strand, within DvMF_1833at 2237.882 kb on - strand, within DvMF_1833at 2237.908 kb on + strand, within DvMF_1833at 2238.100 kb on - strand, within DvMF_1833

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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2,235,165 - +0.2
2,235,172 + +0.5
2,235,349 + +0.3
2,235,357 - +1.0
2,235,357 - +0.0
2,235,599 - DvMF_1831 0.40 +0.6
2,235,687 + DvMF_1831 0.54 +0.4
2,235,725 - DvMF_1831 0.59 +0.4
2,235,843 + DvMF_1831 0.77 +0.1
2,235,846 - DvMF_1831 0.78 +0.6
2,235,995 - +0.8
2,236,205 + DvMF_1832 0.18 +0.4
2,236,255 + DvMF_1832 0.22 +0.4
2,236,359 + DvMF_1832 0.31 +0.0
2,236,402 - DvMF_1832 0.35 +0.7
2,236,423 - DvMF_1832 0.37 -0.8
2,236,625 - DvMF_1832 0.54 +0.6
2,236,668 - DvMF_1832 0.57 +1.0
2,236,725 - DvMF_1832 0.62 +0.6
2,236,786 - DvMF_1832 0.67 +1.0
2,236,800 - DvMF_1832 0.68 +0.7
2,236,840 - DvMF_1832 0.72 +0.8
2,236,853 - DvMF_1832 0.73 +0.9
2,237,307 + DvMF_1833 0.11 +0.1
2,237,315 - DvMF_1833 0.12 +0.5
2,237,459 - DvMF_1833 0.24 +0.5
2,237,533 + DvMF_1833 0.30 -0.5
2,237,645 + DvMF_1833 0.39 +0.3
2,237,648 - DvMF_1833 0.40 -0.3
2,237,653 - DvMF_1833 0.40 +0.3
2,237,709 - DvMF_1833 0.45 +0.2
2,237,882 - DvMF_1833 0.59 +0.3
2,237,908 + DvMF_1833 0.61 +0.1
2,238,100 - DvMF_1833 0.77 +0.2

Or see this region's nucleotide sequence