Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trpA and DvMF_1741 overlap by 4 nucleotides DvMF_1741 and DvMF_1742 are separated by 39 nucleotides DvMF_1742 and DvMF_1743 overlap by 4 nucleotides
DvMF_1740: trpA - tryptophan synthase subunit alpha (RefSeq), at 2,127,525 to 2,128,337
trpA
DvMF_1741: DvMF_1741 - tryptophan synthase subunit beta (RefSeq), at 2,128,334 to 2,129,518
_1741
DvMF_1742: DvMF_1742 - Phosphoribosylanthranilate isomerase (RefSeq), at 2,129,558 to 2,130,235
_1742
DvMF_1743: DvMF_1743 - Indole-3-glycerol-phosphate synthase (RefSeq), at 2,130,232 to 2,131,197
_1743
Position (kb)
2128
2129
2130 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2127.519 kb on - strand at 2127.524 kb on - strand at 2127.747 kb on + strand, within trpA at 2128.203 kb on + strand, within trpA at 2128.412 kb on - strand at 2128.451 kb on - strand at 2128.583 kb on - strand, within DvMF_1741 at 2128.616 kb on - strand, within DvMF_1741 at 2128.646 kb on + strand, within DvMF_1741 at 2128.703 kb on - strand, within DvMF_1741 at 2128.726 kb on + strand, within DvMF_1741 at 2128.951 kb on - strand, within DvMF_1741 at 2128.973 kb on - strand, within DvMF_1741 at 2129.072 kb on + strand, within DvMF_1741 at 2129.092 kb on + strand, within DvMF_1741 at 2129.248 kb on + strand, within DvMF_1741 at 2129.251 kb on - strand, within DvMF_1741 at 2129.335 kb on + strand, within DvMF_1741 at 2129.368 kb on + strand, within DvMF_1741 at 2129.528 kb on - strand at 2129.646 kb on + strand, within DvMF_1742 at 2129.666 kb on + strand, within DvMF_1742 at 2129.865 kb on + strand, within DvMF_1742 at 2130.138 kb on + strand, within DvMF_1742 at 2130.178 kb on + strand at 2130.405 kb on - strand, within DvMF_1743 at 2130.452 kb on - strand, within DvMF_1743
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 2,127,519 - +0.5 2,127,524 - +0.5 2,127,747 + trpA DvMF_1740 0.27 -0.9 2,128,203 + trpA DvMF_1740 0.83 -0.3 2,128,412 - -0.4 2,128,451 - -0.2 2,128,583 - DvMF_1741 0.21 -1.3 2,128,616 - DvMF_1741 0.24 +0.8 2,128,646 + DvMF_1741 0.26 -1.1 2,128,703 - DvMF_1741 0.31 -1.0 2,128,726 + DvMF_1741 0.33 -0.9 2,128,951 - DvMF_1741 0.52 -1.2 2,128,973 - DvMF_1741 0.54 -0.9 2,129,072 + DvMF_1741 0.62 -1.9 2,129,092 + DvMF_1741 0.64 -0.9 2,129,248 + DvMF_1741 0.77 -1.0 2,129,251 - DvMF_1741 0.77 -0.7 2,129,335 + DvMF_1741 0.84 -0.3 2,129,368 + DvMF_1741 0.87 -1.2 2,129,528 - +0.2 2,129,646 + DvMF_1742 0.13 -1.3 2,129,666 + DvMF_1742 0.16 -0.0 2,129,865 + DvMF_1742 0.45 -1.5 2,130,138 + DvMF_1742 0.86 -0.7 2,130,178 + -2.1 2,130,405 - DvMF_1743 0.18 +2.1 2,130,452 - DvMF_1743 0.23 -3.0
Or see this region's nucleotide sequence