Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1372 and DvMF_1373 are separated by 687 nucleotides DvMF_1373 and DvMF_1374 overlap by 1 nucleotides DvMF_1374 and DvMF_1375 overlap by 32 nucleotides
DvMF_1372: DvMF_1372 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,679,067 to 1,681,502
_1372
DvMF_1373: DvMF_1373 - hypothetical protein (RefSeq), at 1,682,190 to 1,682,438
_1373
DvMF_1374: DvMF_1374 - putative PAS/PAC sensor protein (RefSeq), at 1,682,438 to 1,683,664
_1374
DvMF_1375: DvMF_1375 - histidine kinase (RefSeq), at 1,683,633 to 1,684,976
_1375
Position (kb)
1682
1683
1684 Strain fitness (log2 ratio)
-1
0
1 at 1681.639 kb on - strand at 1682.015 kb on - strand at 1682.098 kb on + strand at 1682.116 kb on - strand at 1682.143 kb on + strand at 1682.164 kb on - strand at 1682.196 kb on - strand at 1682.227 kb on + strand, within DvMF_1373 at 1682.567 kb on - strand, within DvMF_1374 at 1682.595 kb on - strand, within DvMF_1374 at 1682.613 kb on + strand, within DvMF_1374 at 1682.795 kb on - strand, within DvMF_1374 at 1682.838 kb on + strand, within DvMF_1374 at 1682.957 kb on + strand, within DvMF_1374 at 1682.965 kb on - strand, within DvMF_1374 at 1682.993 kb on - strand, within DvMF_1374 at 1683.059 kb on + strand, within DvMF_1374 at 1683.139 kb on + strand, within DvMF_1374 at 1683.147 kb on - strand, within DvMF_1374 at 1683.471 kb on + strand, within DvMF_1374 at 1683.545 kb on + strand at 1683.845 kb on - strand, within DvMF_1375 at 1683.950 kb on - strand, within DvMF_1375 at 1683.957 kb on + strand, within DvMF_1375 at 1684.064 kb on - strand, within DvMF_1375 at 1684.102 kb on - strand, within DvMF_1375 at 1684.194 kb on - strand, within DvMF_1375 at 1684.231 kb on + strand, within DvMF_1375 at 1684.239 kb on - strand, within DvMF_1375 at 1684.267 kb on - strand, within DvMF_1375 at 1684.391 kb on + strand, within DvMF_1375 at 1684.576 kb on - strand, within DvMF_1375 at 1684.605 kb on - strand, within DvMF_1375 at 1684.630 kb on - strand, within DvMF_1375
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 1,681,639 - +1.1 1,682,015 - -0.6 1,682,098 + +0.4 1,682,116 - +0.4 1,682,143 + -0.2 1,682,164 - -0.2 1,682,196 - +0.8 1,682,227 + DvMF_1373 0.15 +0.8 1,682,567 - DvMF_1374 0.11 +1.2 1,682,595 - DvMF_1374 0.13 +0.6 1,682,613 + DvMF_1374 0.14 +0.7 1,682,795 - DvMF_1374 0.29 +0.8 1,682,838 + DvMF_1374 0.33 +0.6 1,682,957 + DvMF_1374 0.42 +0.2 1,682,965 - DvMF_1374 0.43 +0.5 1,682,993 - DvMF_1374 0.45 +0.7 1,683,059 + DvMF_1374 0.51 +0.8 1,683,139 + DvMF_1374 0.57 +1.0 1,683,147 - DvMF_1374 0.58 +0.7 1,683,471 + DvMF_1374 0.84 +0.7 1,683,545 + +0.4 1,683,845 - DvMF_1375 0.16 +0.5 1,683,950 - DvMF_1375 0.24 +0.3 1,683,957 + DvMF_1375 0.24 +1.1 1,684,064 - DvMF_1375 0.32 +1.1 1,684,102 - DvMF_1375 0.35 +0.8 1,684,194 - DvMF_1375 0.42 +0.5 1,684,231 + DvMF_1375 0.44 +0.6 1,684,239 - DvMF_1375 0.45 +0.3 1,684,267 - DvMF_1375 0.47 +0.5 1,684,391 + DvMF_1375 0.56 -0.0 1,684,576 - DvMF_1375 0.70 +1.3 1,684,605 - DvMF_1375 0.72 +0.5 1,684,630 - DvMF_1375 0.74 +0.1
Or see this region's nucleotide sequence