Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1366

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1365 and DvMF_1366 are separated by 331 nucleotidesDvMF_1366 and DvMF_1367 are separated by 36 nucleotides DvMF_1365: DvMF_1365 - Peptidase M16C associated domain protein (RefSeq), at 1,671,662 to 1,674,568 _1365 DvMF_1366: DvMF_1366 - diguanylate cyclase (RefSeq), at 1,674,900 to 1,675,676 _1366 DvMF_1367: DvMF_1367 - hypothetical protein (RefSeq), at 1,675,713 to 1,676,474 _1367 Position (kb) 1674 1675 1676Strain fitness (log2 ratio) -3 -2 -1 0 1at 1673.974 kb on + strand, within DvMF_1365at 1674.057 kb on - strand, within DvMF_1365at 1674.103 kb on - strand, within DvMF_1365at 1674.150 kb on - strand, within DvMF_1365at 1674.384 kb on - strandat 1674.973 kb on + strandat 1674.975 kb on - strandat 1675.010 kb on - strand, within DvMF_1366at 1675.047 kb on - strand, within DvMF_1366at 1675.204 kb on + strand, within DvMF_1366at 1675.298 kb on + strand, within DvMF_1366at 1675.318 kb on + strand, within DvMF_1366at 1675.493 kb on - strand, within DvMF_1366at 1675.685 kb on - strandat 1675.947 kb on - strand, within DvMF_1367at 1676.002 kb on - strand, within DvMF_1367at 1676.075 kb on + strand, within DvMF_1367at 1676.129 kb on + strand, within DvMF_1367at 1676.177 kb on + strand, within DvMF_1367at 1676.299 kb on - strand, within DvMF_1367at 1676.304 kb on - strand, within DvMF_1367at 1676.332 kb on + strand, within DvMF_1367at 1676.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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1,673,974 + DvMF_1365 0.80 -3.0
1,674,057 - DvMF_1365 0.82 -1.3
1,674,103 - DvMF_1365 0.84 -0.2
1,674,150 - DvMF_1365 0.86 -1.0
1,674,384 - -0.5
1,674,973 + +1.0
1,674,975 - +0.5
1,675,010 - DvMF_1366 0.14 +0.1
1,675,047 - DvMF_1366 0.19 +0.4
1,675,204 + DvMF_1366 0.39 +1.4
1,675,298 + DvMF_1366 0.51 +0.4
1,675,318 + DvMF_1366 0.54 +0.2
1,675,493 - DvMF_1366 0.76 +0.2
1,675,685 - +0.2
1,675,947 - DvMF_1367 0.31 +1.1
1,676,002 - DvMF_1367 0.38 +0.5
1,676,075 + DvMF_1367 0.48 +0.3
1,676,129 + DvMF_1367 0.55 +0.7
1,676,177 + DvMF_1367 0.61 +0.0
1,676,299 - DvMF_1367 0.77 +0.0
1,676,304 - DvMF_1367 0.78 +0.1
1,676,332 + DvMF_1367 0.81 +0.8
1,676,582 - +0.5

Or see this region's nucleotide sequence