Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1203 and DvMF_1204 are separated by 210 nucleotides DvMF_1204 and DvMF_1205 are separated by 178 nucleotides
DvMF_1203: DvMF_1203 - protein of unknown function DUF81 (RefSeq), at 1,481,969 to 1,482,766
_1203
DvMF_1204: DvMF_1204 - FMN-dependent alpha-hydroxy acid dehydrogenase (RefSeq), at 1,482,977 to 1,483,996
_1204
DvMF_1205: DvMF_1205 - GntR domain protein (RefSeq), at 1,484,175 to 1,484,891
_1205
Position (kb)
1482
1483
1484 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1482.003 kb on + strand at 1482.160 kb on - strand, within DvMF_1203 at 1482.177 kb on + strand, within DvMF_1203 at 1482.260 kb on - strand, within DvMF_1203 at 1482.383 kb on - strand, within DvMF_1203 at 1482.477 kb on + strand, within DvMF_1203 at 1482.546 kb on + strand, within DvMF_1203 at 1482.546 kb on + strand, within DvMF_1203 at 1482.806 kb on - strand at 1483.045 kb on - strand at 1483.316 kb on + strand, within DvMF_1204 at 1483.383 kb on + strand, within DvMF_1204 at 1483.391 kb on - strand, within DvMF_1204 at 1483.473 kb on + strand, within DvMF_1204 at 1483.758 kb on + strand, within DvMF_1204 at 1483.763 kb on + strand, within DvMF_1204 at 1483.766 kb on - strand, within DvMF_1204 at 1483.812 kb on - strand, within DvMF_1204 at 1483.945 kb on + strand at 1484.387 kb on - strand, within DvMF_1205 at 1484.490 kb on + strand, within DvMF_1205 at 1484.498 kb on - strand, within DvMF_1205 at 1484.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 1,482,003 + +0.8 1,482,160 - DvMF_1203 0.24 +0.2 1,482,177 + DvMF_1203 0.26 +0.6 1,482,260 - DvMF_1203 0.36 +0.4 1,482,383 - DvMF_1203 0.52 +1.0 1,482,477 + DvMF_1203 0.64 -0.3 1,482,546 + DvMF_1203 0.72 +0.3 1,482,546 + DvMF_1203 0.72 +0.1 1,482,806 - +2.5 1,483,045 - -0.7 1,483,316 + DvMF_1204 0.33 -1.7 1,483,383 + DvMF_1204 0.40 -0.1 1,483,391 - DvMF_1204 0.41 -2.2 1,483,473 + DvMF_1204 0.49 +0.5 1,483,758 + DvMF_1204 0.77 +0.6 1,483,763 + DvMF_1204 0.77 -1.4 1,483,766 - DvMF_1204 0.77 -1.6 1,483,812 - DvMF_1204 0.82 -1.0 1,483,945 + -0.9 1,484,387 - DvMF_1205 0.30 +1.1 1,484,490 + DvMF_1205 0.44 +0.4 1,484,498 - DvMF_1205 0.45 +0.8 1,484,956 + +0.8
Or see this region's nucleotide sequence