Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1193

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1191 and DvMF_1192 are separated by 204 nucleotidesDvMF_1192 and DvMF_1193 are separated by 42 nucleotidesDvMF_1193 and DvMF_1194 are separated by 272 nucleotidesDvMF_1194 and DvMF_1195 are separated by 100 nucleotides DvMF_1191: DvMF_1191 - hypothetical protein (RefSeq), at 1,469,733 to 1,470,872 _1191 DvMF_1192: DvMF_1192 - hypothetical protein (RefSeq), at 1,471,077 to 1,471,262 _1192 DvMF_1193: DvMF_1193 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,471,305 to 1,472,309 _1193 DvMF_1194: DvMF_1194 - GrpE protein (RefSeq), at 1,472,582 to 1,473,187 _1194 DvMF_1195: DvMF_1195 - heat-inducible transcription repressor HrcA (RefSeq), at 1,473,288 to 1,474,355 _1195 Position (kb) 1471 1472 1473Strain fitness (log2 ratio) -1 0 1at 1470.521 kb on + strand, within DvMF_1191at 1470.572 kb on - strand, within DvMF_1191at 1470.613 kb on - strand, within DvMF_1191at 1470.734 kb on + strand, within DvMF_1191at 1470.742 kb on - strand, within DvMF_1191at 1471.219 kb on + strand, within DvMF_1192at 1471.452 kb on + strand, within DvMF_1193at 1471.561 kb on + strand, within DvMF_1193at 1471.564 kb on - strand, within DvMF_1193at 1471.766 kb on + strand, within DvMF_1193at 1471.777 kb on + strand, within DvMF_1193at 1471.777 kb on + strand, within DvMF_1193at 1471.790 kb on - strand, within DvMF_1193at 1471.855 kb on + strand, within DvMF_1193at 1471.911 kb on - strand, within DvMF_1193at 1473.157 kb on - strandat 1473.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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1,470,521 + DvMF_1191 0.69 +0.6
1,470,572 - DvMF_1191 0.74 -1.1
1,470,613 - DvMF_1191 0.77 +0.5
1,470,734 + DvMF_1191 0.88 +1.0
1,470,742 - DvMF_1191 0.89 +1.1
1,471,219 + DvMF_1192 0.76 +0.1
1,471,452 + DvMF_1193 0.15 +0.5
1,471,561 + DvMF_1193 0.25 +0.3
1,471,564 - DvMF_1193 0.26 -0.7
1,471,766 + DvMF_1193 0.46 -0.5
1,471,777 + DvMF_1193 0.47 +0.1
1,471,777 + DvMF_1193 0.47 +0.5
1,471,790 - DvMF_1193 0.48 +0.2
1,471,855 + DvMF_1193 0.55 -0.1
1,471,911 - DvMF_1193 0.60 +0.7
1,473,157 - -1.1
1,473,197 - +0.5

Or see this region's nucleotide sequence