Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1073

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1072 and DvMF_1073 are separated by 10 nucleotidesDvMF_1073 and DvMF_1074 are separated by 701 nucleotides DvMF_1072: DvMF_1072 - hypothetical protein (RefSeq), at 1,311,770 to 1,313,557 _1072 DvMF_1073: DvMF_1073 - hypothetical protein (RefSeq), at 1,313,568 to 1,313,795 _1073 DvMF_1074: DvMF_1074 - hypothetical protein (RefSeq), at 1,314,497 to 1,315,180 _1074 Position (kb) 1313 1314Strain fitness (log2 ratio) -1 0 1at 1312.680 kb on - strand, within DvMF_1072at 1312.776 kb on - strand, within DvMF_1072at 1312.805 kb on + strand, within DvMF_1072at 1312.842 kb on - strand, within DvMF_1072at 1313.151 kb on + strand, within DvMF_1072at 1313.542 kb on + strandat 1313.701 kb on + strand, within DvMF_1073at 1313.709 kb on - strand, within DvMF_1073at 1313.709 kb on - strand, within DvMF_1073at 1314.078 kb on + strandat 1314.142 kb on - strandat 1314.152 kb on - strandat 1314.208 kb on + strandat 1314.240 kb on + strandat 1314.240 kb on + strandat 1314.248 kb on - strandat 1314.280 kb on + strandat 1314.288 kb on - strandat 1314.288 kb on - strandat 1314.433 kb on - strandat 1314.745 kb on + strand, within DvMF_1074

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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1,312,680 - DvMF_1072 0.51 +0.5
1,312,776 - DvMF_1072 0.56 +0.3
1,312,805 + DvMF_1072 0.58 +0.9
1,312,842 - DvMF_1072 0.60 +1.1
1,313,151 + DvMF_1072 0.77 +0.3
1,313,542 + +0.7
1,313,701 + DvMF_1073 0.58 +0.5
1,313,709 - DvMF_1073 0.62 +0.5
1,313,709 - DvMF_1073 0.62 +1.2
1,314,078 + +0.1
1,314,142 - +0.1
1,314,152 - +0.3
1,314,208 + +0.2
1,314,240 + +0.0
1,314,240 + +0.0
1,314,248 - +0.7
1,314,280 + +0.7
1,314,288 - +1.1
1,314,288 - +0.1
1,314,433 - -0.1
1,314,745 + DvMF_1074 0.36 +0.0

Or see this region's nucleotide sequence