Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0822

Experiment: 5 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0821 and DvMF_0822 are separated by 922 nucleotidesDvMF_0822 and DvMF_0823 are separated by 268 nucleotides DvMF_0821: DvMF_0821 - purine nucleoside phosphorylase (RefSeq), at 989,439 to 990,284 _0821 DvMF_0822: DvMF_0822 - GTP-binding protein TypA (RefSeq), at 991,207 to 993,045 _0822 DvMF_0823: DvMF_0823 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 993,314 to 994,684 _0823 Position (kb) 991 992 993 994Strain fitness (log2 ratio) -1 0 1at 990.279 kb on + strandat 990.279 kb on + strandat 990.291 kb on + strandat 990.299 kb on - strandat 990.321 kb on - strandat 990.582 kb on + strandat 990.592 kb on + strandat 990.609 kb on + strandat 990.826 kb on + strandat 990.874 kb on - strandat 991.159 kb on + strandat 991.232 kb on + strandat 991.368 kb on - strandat 991.488 kb on + strand, within DvMF_0822at 991.579 kb on + strand, within DvMF_0822at 991.925 kb on - strand, within DvMF_0822at 992.626 kb on + strand, within DvMF_0822at 992.734 kb on - strand, within DvMF_0822at 992.779 kb on + strand, within DvMF_0822at 992.787 kb on - strand, within DvMF_0822at 992.987 kb on - strandat 993.068 kb on - strandat 993.081 kb on + strandat 993.304 kb on + strandat 993.900 kb on - strand, within DvMF_0823at 993.983 kb on - strand, within DvMF_0823at 993.983 kb on - strand, within DvMF_0823

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
remove
990,279 + +0.4
990,279 + +0.4
990,291 + +0.3
990,299 - +0.1
990,321 - +0.2
990,582 + +0.4
990,592 + +0.8
990,609 + +0.3
990,826 + +0.5
990,874 - +0.8
991,159 + +0.3
991,232 + +1.0
991,368 - +0.8
991,488 + DvMF_0822 0.15 +1.3
991,579 + DvMF_0822 0.20 +0.8
991,925 - DvMF_0822 0.39 +0.9
992,626 + DvMF_0822 0.77 +1.2
992,734 - DvMF_0822 0.83 +0.8
992,779 + DvMF_0822 0.85 +0.4
992,787 - DvMF_0822 0.86 +1.1
992,987 - +0.6
993,068 - +0.9
993,081 + +1.4
993,304 + +0.5
993,900 - DvMF_0823 0.43 +0.1
993,983 - DvMF_0823 0.49 +0.5
993,983 - DvMF_0823 0.49 +0.1

Or see this region's nucleotide sequence