Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0678 and DvMF_0679 overlap by 4 nucleotides DvMF_0679 and DvMF_0680 are separated by 63 nucleotides
DvMF_0678: DvMF_0678 - polysaccharide biosynthesis protein (RefSeq), at 817,648 to 819,147
_0678
DvMF_0679: DvMF_0679 - O-antigen polymerase (RefSeq), at 819,144 to 820,457
_0679
DvMF_0680: DvMF_0680 - hypothetical protein (RefSeq), at 820,521 to 821,840
_0680
Position (kb) 819
820
821 Strain fitness (log2 ratio) -1
0
1 at 818.322 kb on + strand, within DvMF_0678 at 818.322 kb on + strand, within DvMF_0678 at 818.387 kb on + strand, within DvMF_0678 at 818.395 kb on - strand, within DvMF_0678 at 818.461 kb on - strand, within DvMF_0678 at 818.485 kb on + strand, within DvMF_0678 at 818.564 kb on - strand, within DvMF_0678 at 818.601 kb on + strand, within DvMF_0678 at 818.601 kb on + strand, within DvMF_0678 at 818.609 kb on - strand, within DvMF_0678 at 818.822 kb on + strand, within DvMF_0678 at 818.822 kb on + strand, within DvMF_0678 at 818.891 kb on + strand, within DvMF_0678 at 819.235 kb on + strand at 819.345 kb on - strand, within DvMF_0679 at 819.624 kb on + strand, within DvMF_0679 at 819.930 kb on - strand, within DvMF_0679 at 820.185 kb on + strand, within DvMF_0679 at 820.213 kb on + strand, within DvMF_0679 at 820.510 kb on - strand at 820.737 kb on + strand, within DvMF_0680 at 820.834 kb on - strand, within DvMF_0680 at 820.882 kb on - strand, within DvMF_0680 at 820.973 kb on + strand, within DvMF_0680 at 820.981 kb on - strand, within DvMF_0680 at 820.999 kb on - strand, within DvMF_0680 at 821.061 kb on - strand, within DvMF_0680 at 821.098 kb on - strand, within DvMF_0680 at 821.144 kb on - strand, within DvMF_0680 at 821.194 kb on + strand, within DvMF_0680 at 821.449 kb on + strand, within DvMF_0680
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 818,322 + DvMF_0678 0.45 +0.4 818,322 + DvMF_0678 0.45 +1.2 818,387 + DvMF_0678 0.49 +0.3 818,395 - DvMF_0678 0.50 +0.2 818,461 - DvMF_0678 0.54 +0.5 818,485 + DvMF_0678 0.56 +0.3 818,564 - DvMF_0678 0.61 +0.3 818,601 + DvMF_0678 0.64 +0.5 818,601 + DvMF_0678 0.64 +0.1 818,609 - DvMF_0678 0.64 +0.5 818,822 + DvMF_0678 0.78 +0.4 818,822 + DvMF_0678 0.78 +0.9 818,891 + DvMF_0678 0.83 +0.4 819,235 + +0.3 819,345 - DvMF_0679 0.15 +0.7 819,624 + DvMF_0679 0.37 +0.6 819,930 - DvMF_0679 0.60 +0.3 820,185 + DvMF_0679 0.79 +0.6 820,213 + DvMF_0679 0.81 +0.3 820,510 - +0.3 820,737 + DvMF_0680 0.16 +0.9 820,834 - DvMF_0680 0.24 +0.2 820,882 - DvMF_0680 0.27 +0.3 820,973 + DvMF_0680 0.34 +1.5 820,981 - DvMF_0680 0.35 +0.3 820,999 - DvMF_0680 0.36 -0.1 821,061 - DvMF_0680 0.41 +0.5 821,098 - DvMF_0680 0.44 +0.6 821,144 - DvMF_0680 0.47 +0.5 821,194 + DvMF_0680 0.51 +0.8 821,449 + DvMF_0680 0.70 +0.3
Or see this region's nucleotide sequence