Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0600 and DvMF_0601 are separated by 386 nucleotides DvMF_0601 and DvMF_0602 are separated by 517 nucleotides DvMF_0602 and DvMF_0603 are separated by 4 nucleotides
DvMF_0600: DvMF_0600 - degV family protein (RefSeq), at 712,037 to 714,088
_0600
DvMF_0601: DvMF_0601 - hypothetical protein (RefSeq), at 714,475 to 714,708
_0601
DvMF_0602: DvMF_0602 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 715,226 to 715,552
_0602
DvMF_0603: DvMF_0603 - 2-oxoglutarate ferredoxin oxidoreductase subunit alpha (RefSeq), at 715,557 to 716,705
_0603
Position (kb) 714
715 Strain fitness (log2 ratio) -1
0
1 at 713.495 kb on + strand, within DvMF_0600 at 713.503 kb on - strand, within DvMF_0600 at 713.577 kb on + strand, within DvMF_0600 at 713.597 kb on - strand, within DvMF_0600 at 713.801 kb on - strand, within DvMF_0600 at 713.811 kb on - strand, within DvMF_0600 at 713.867 kb on - strand, within DvMF_0600 at 713.990 kb on + strand at 714.159 kb on + strand at 714.594 kb on + strand, within DvMF_0601 at 714.602 kb on - strand, within DvMF_0601 at 714.888 kb on + strand at 715.034 kb on + strand at 715.309 kb on - strand, within DvMF_0602 at 715.401 kb on + strand, within DvMF_0602 at 715.404 kb on - strand, within DvMF_0602 at 715.541 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 713,495 + DvMF_0600 0.71 +0.6 713,503 - DvMF_0600 0.71 +1.4 713,577 + DvMF_0600 0.75 +1.3 713,597 - DvMF_0600 0.76 +0.2 713,801 - DvMF_0600 0.86 +0.2 713,811 - DvMF_0600 0.86 +0.7 713,867 - DvMF_0600 0.89 +0.8 713,990 + +0.8 714,159 + +1.1 714,594 + DvMF_0601 0.51 +0.2 714,602 - DvMF_0601 0.54 +0.0 714,888 + +0.6 715,034 + +0.8 715,309 - DvMF_0602 0.25 +0.6 715,401 + DvMF_0602 0.54 +0.4 715,404 - DvMF_0602 0.54 +0.5 715,541 + -0.2
Or see this region's nucleotide sequence