Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0515

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0514 and DvMF_0515 are separated by 292 nucleotidesDvMF_0515 and DvMF_0516 are separated by 316 nucleotides DvMF_0514: DvMF_0514 - phosphonoacetaldehyde hydrolase (RefSeq), at 605,944 to 606,786 _0514 DvMF_0515: DvMF_0515 - sulfoacetaldehyde acetyltransferase (RefSeq), at 607,079 to 608,821 _0515 DvMF_0516: DvMF_0516 - aminotransferase class-III (RefSeq), at 609,138 to 610,517 _0516 Position (kb) 607 608 609Strain fitness (log2 ratio) -1 0 1at 606.091 kb on + strand, within DvMF_0514at 606.106 kb on - strand, within DvMF_0514at 606.297 kb on + strand, within DvMF_0514at 606.502 kb on + strand, within DvMF_0514at 606.613 kb on + strand, within DvMF_0514at 606.613 kb on + strand, within DvMF_0514at 606.650 kb on + strand, within DvMF_0514at 606.653 kb on - strand, within DvMF_0514at 606.660 kb on + strand, within DvMF_0514at 606.668 kb on - strand, within DvMF_0514at 607.043 kb on + strandat 607.647 kb on + strand, within DvMF_0515at 608.785 kb on - strandat 609.264 kb on + strandat 609.388 kb on - strand, within DvMF_0516at 609.656 kb on - strand, within DvMF_0516

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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606,091 + DvMF_0514 0.17 +0.4
606,106 - DvMF_0514 0.19 -0.2
606,297 + DvMF_0514 0.42 +0.4
606,502 + DvMF_0514 0.66 +1.2
606,613 + DvMF_0514 0.79 +0.4
606,613 + DvMF_0514 0.79 +0.3
606,650 + DvMF_0514 0.84 +0.5
606,653 - DvMF_0514 0.84 +0.5
606,660 + DvMF_0514 0.85 +0.8
606,668 - DvMF_0514 0.86 +0.4
607,043 + +0.9
607,647 + DvMF_0515 0.33 +0.6
608,785 - +0.5
609,264 + +0.5
609,388 - DvMF_0516 0.18 +1.0
609,656 - DvMF_0516 0.38 +0.1

Or see this region's nucleotide sequence