Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0274 and DvMF_0275 are separated by 520 nucleotides DvMF_0275 and DvMF_0276 are separated by 9 nucleotides
DvMF_0274: DvMF_0274 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 313,455 to 314,408
_0274
DvMF_0275: DvMF_0275 - putative alpha-isopropylmalate/homocitrate synthase family transferase (RefSeq), at 314,929 to 316,551
_0275
DvMF_0276: DvMF_0276 - aspartate kinase (RefSeq), at 316,561 to 317,790
_0276
Position (kb) 314
315
316
317 Strain fitness (log2 ratio) -1
0
1
2 at 314.038 kb on + strand, within DvMF_0274 at 314.098 kb on + strand, within DvMF_0274 at 314.106 kb on - strand, within DvMF_0274 at 314.256 kb on + strand, within DvMF_0274 at 314.256 kb on + strand, within DvMF_0274 at 314.929 kb on + strand at 315.394 kb on - strand, within DvMF_0275 at 315.424 kb on + strand, within DvMF_0275 at 315.637 kb on + strand, within DvMF_0275 at 315.731 kb on + strand, within DvMF_0275 at 315.739 kb on - strand, within DvMF_0275 at 315.766 kb on + strand, within DvMF_0275 at 315.774 kb on - strand, within DvMF_0275 at 315.774 kb on - strand, within DvMF_0275 at 315.877 kb on + strand, within DvMF_0275 at 315.885 kb on - strand, within DvMF_0275 at 315.902 kb on + strand, within DvMF_0275 at 315.929 kb on + strand, within DvMF_0275 at 316.111 kb on - strand, within DvMF_0275 at 316.334 kb on + strand, within DvMF_0275 at 317.061 kb on + strand, within DvMF_0276
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 314,038 + DvMF_0274 0.61 +0.7 314,098 + DvMF_0274 0.67 +0.2 314,106 - DvMF_0274 0.68 +0.6 314,256 + DvMF_0274 0.84 +0.2 314,256 + DvMF_0274 0.84 +0.4 314,929 + +2.4 315,394 - DvMF_0275 0.29 -0.8 315,424 + DvMF_0275 0.30 +0.1 315,637 + DvMF_0275 0.44 -0.8 315,731 + DvMF_0275 0.49 -0.7 315,739 - DvMF_0275 0.50 -0.7 315,766 + DvMF_0275 0.52 +0.0 315,774 - DvMF_0275 0.52 -0.5 315,774 - DvMF_0275 0.52 -0.8 315,877 + DvMF_0275 0.58 -1.4 315,885 - DvMF_0275 0.59 -0.5 315,902 + DvMF_0275 0.60 -1.6 315,929 + DvMF_0275 0.62 -0.4 316,111 - DvMF_0275 0.73 -0.7 316,334 + DvMF_0275 0.87 +0.8 317,061 + DvMF_0276 0.41 +0.0
Or see this region's nucleotide sequence