Experiment: 5 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0261 and DvMF_0262 are separated by 501 nucleotides DvMF_0262 and DvMF_0263 are separated by 33 nucleotides DvMF_0263 and DvMF_0264 are separated by 98 nucleotides DvMF_0264 and DvMF_0265 are separated by 28 nucleotides DvMF_0265 and ileS are separated by 117 nucleotides
DvMF_0261: DvMF_0261 - putative chemotaxis phosphatase, CheZ (RefSeq), at 299,020 to 299,766
_0261
DvMF_0262: DvMF_0262 - Homocysteine formation from aspartate semialdehyde (NIL/ferredoxin component) <small>(from data)</small>, at 300,268 to 300,711
_0262
DvMF_0263: DvMF_0263 - tol-pal system protein YbgF (RefSeq), at 300,745 to 301,746
_0263
DvMF_0264: DvMF_0264 - hypothetical protein (RefSeq), at 301,845 to 302,039
_0264
DvMF_0265: DvMF_0265 - lipoprotein signal peptidase (RefSeq), at 302,068 to 302,568
_0265
DvMF_0266: ileS - isoleucyl-tRNA synthetase (RefSeq), at 302,686 to 305,502
ileS
Position (kb) 300
301
302 Strain fitness (log2 ratio) -1
0
1 at 299.770 kb on - strand at 299.938 kb on + strand at 299.938 kb on + strand at 299.983 kb on - strand at 300.141 kb on - strand at 300.256 kb on - strand at 300.311 kb on + strand at 300.328 kb on - strand, within DvMF_0262 at 300.521 kb on - strand, within DvMF_0262 at 300.606 kb on + strand, within DvMF_0262 at 300.689 kb on + strand at 301.781 kb on + strand at 301.806 kb on + strand at 302.025 kb on - strand at 302.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5 day starvation, 30C remove 299,770 - -0.1 299,938 + +0.4 299,938 + +0.6 299,983 - +0.4 300,141 - +0.2 300,256 - +0.2 300,311 + -0.3 300,328 - DvMF_0262 0.14 -1.1 300,521 - DvMF_0262 0.57 -1.4 300,606 + DvMF_0262 0.76 -1.0 300,689 + -1.2 301,781 + -0.6 301,806 + +1.1 302,025 - +0.2 302,064 - +0.4
Or see this region's nucleotide sequence