Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0243

Experiment: 5 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0242 and rnc are separated by 642 nucleotidesrnc and DvMF_0244 are separated by 100 nucleotides DvMF_0242: DvMF_0242 - DRTGG domain protein (RefSeq), at 273,888 to 274,952 _0242 DvMF_0243: rnc - ribonuclease III (RefSeq), at 275,595 to 276,287 rnc DvMF_0244: DvMF_0244 - flagellin domain protein (RefSeq), at 276,388 to 277,284 _0244 Position (kb) 275 276 277Strain fitness (log2 ratio) -1 0 1at 275.226 kb on - strandat 275.300 kb on - strandat 275.331 kb on + strandat 275.346 kb on + strandat 275.390 kb on - strandat 275.491 kb on + strandat 276.433 kb on - strandat 276.594 kb on - strand, within DvMF_0244at 276.639 kb on + strand, within DvMF_0244at 276.666 kb on - strand, within DvMF_0244at 276.758 kb on + strand, within DvMF_0244at 276.834 kb on + strand, within DvMF_0244at 277.187 kb on - strand, within DvMF_0244at 277.205 kb on - strandat 277.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
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275,226 - +0.9
275,300 - +0.6
275,331 + +0.6
275,346 + +0.8
275,390 - +0.3
275,491 + +0.4
276,433 - +0.6
276,594 - DvMF_0244 0.23 -0.0
276,639 + DvMF_0244 0.28 -0.1
276,666 - DvMF_0244 0.31 +1.0
276,758 + DvMF_0244 0.41 -0.0
276,834 + DvMF_0244 0.50 +0.1
277,187 - DvMF_0244 0.89 +1.1
277,205 - +1.6
277,241 - -0.4

Or see this region's nucleotide sequence