Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0016

Experiment: 5 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0014 and DvMF_0015 are separated by 7 nucleotidesDvMF_0015 and DvMF_0016 overlap by 4 nucleotidesDvMF_0016 and DvMF_0017 are separated by 71 nucleotidesDvMF_0017 and DvMF_0018 are separated by 3 nucleotides DvMF_0014: DvMF_0014 - hypothetical protein (RefSeq), at 18,759 to 21,203 _0014 DvMF_0015: DvMF_0015 - peptidase C26 (RefSeq), at 21,211 to 21,834 _0015 DvMF_0016: DvMF_0016 - transferase, putative (RefSeq), at 21,831 to 22,622 _0016 DvMF_0017: DvMF_0017 - Methyltransferase type 11 (RefSeq), at 22,694 to 23,458 _0017 DvMF_0018: DvMF_0018 - adenylylsulfate kinase (RefSeq), at 23,462 to 24,049 _0018 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1at 21.162 kb on + strandat 21.197 kb on - strandat 21.205 kb on - strandat 21.241 kb on - strandat 21.285 kb on - strand, within DvMF_0015at 21.836 kb on - strandat 22.011 kb on - strand, within DvMF_0016at 22.263 kb on + strand, within DvMF_0016at 22.379 kb on + strand, within DvMF_0016at 22.399 kb on - strand, within DvMF_0016at 22.399 kb on - strand, within DvMF_0016at 22.399 kb on - strand, within DvMF_0016at 23.086 kb on + strand, within DvMF_0017at 23.304 kb on + strand, within DvMF_0017at 23.334 kb on + strand, within DvMF_0017at 23.460 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5 day starvation, 30C
remove
21,162 + +0.5
21,197 - +0.2
21,205 - +0.7
21,241 - -0.6
21,285 - DvMF_0015 0.12 -0.1
21,836 - +1.0
22,011 - DvMF_0016 0.23 -1.3
22,263 + DvMF_0016 0.55 -1.6
22,379 + DvMF_0016 0.69 -1.1
22,399 - DvMF_0016 0.72 +0.1
22,399 - DvMF_0016 0.72 -0.8
22,399 - DvMF_0016 0.72 -1.0
23,086 + DvMF_0017 0.51 -0.0
23,304 + DvMF_0017 0.80 +0.5
23,334 + DvMF_0017 0.84 +1.2
23,460 - -0.1

Or see this region's nucleotide sequence